Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G002343`

染色体: Chr06 坐标: 34080484-34095065 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G002343`
名称	SmilChr06G002343
描述	patatin-like protein 1
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	34080484 - 34095065 / `+`

ID 对照

NCBI Gene ID	`LOC130989166`
GeneID	`130989166`
locus_tag	`-`
NCBI Name	`LOC130989166`
原始查询	`LOC130989166`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	patatin-like protein 1
产物	patatin-like protein 1
Arabidopsis	`AT4G37070` (PLP1) Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829861] identity=58.1; qcov=1.01; evalue=4.94e-162; confidence=high
Rice	`Os08g0477100` (OspPLAIIepsilon) - identity=53.8; qcov=0.98; evalue=2.11e-146; confidence=high
GO	GO:0004620 (glycerophospholipase activity); GO:0006629 (lipid metabolic process); GO:0047372 (monoacylglycerol lipase activity)
KEGG	-
Pfam	PF01734 (Patatin)
InterPro	-
eggNOG	-
NR	GeneID:130989166

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057769087.1`
2	Cytoplasm	细胞质	0.60000	`XP_057769087.1`
3	Nucleus	细胞核	0.00000	`XP_057769087.1`
4	Chromosome	染色体	0.00000	`XP_057769087.1`
5	Centromere	着丝粒	0.00000	`XP_057769087.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:34083655`	`C`	`T`	EMS_canonical_SNV	stop_gained	16	A11,A13,A16,A24,B102,B123,B131,B20,B30,B46,B53,B66,B94,C33,C42,C58
`Chr6:34093431`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C5
`Chr6:34093596`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B12,B137,B55,C2
`Chr6:34093619`	`TCA`	`T`	2bp_deletion	frameshift_variant	1	A3
`Chr6:34093619`	`TCA`	`T`	2bp_deletion	CDS_variant	1	A3
`Chr6:34093622`	`C`	`CA`	1bp_insertion	frameshift_variant	10	A18,A4,A7,B10,B140,B40,B42,B43,B78,C58
`Chr6:34094609`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:34094751`	`C`	`CA`	1bp_insertion	frameshift_variant	7	B112,B31,B40,B76,B77,C21,C79
`Chr6:34094765`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A19
`Chr6:34094793`	`GT`	`G`	1bp_deletion	frameshift_variant	19	A20,A23,A9,B113,B128,B132,B15,B51,B64,B8,B83,B91,C19,C3,C46,C48,C5,C7,C77

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769087.1

394 aa

197

394

Patatin

PF01734 Patatin 23-225 aa

XP_057769088.1

393 aa

196

393

Patatin

PF01734 Patatin 23-224 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769087.1`	Pfam	`PF01734`	Patatin	Domain	23	225	4.6e-26	92.9	Patatin-like phospholipase
`XP_057769088.1`	Pfam	`PF01734`	Patatin	Domain	23	224	8.1e-27	95.4	Patatin-like phospholipase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057913104.1
AAACACTAGCTCATTGTTTCCAATGCATTTTATACAGCTATTTTGCTTTTAAAAACATGAAGCATTGATCATAAATATTTATTTGGCAACTGTACAGCTTGCATTGAAAGCTCATTTCAATCTGTTTTTTTTTTTTTTTTCGTTCAAGATGAATTTTAATAGGTATTTATCATTATAAAGCACATTTCTACGCAGACTCACACAACAAGGGAATCAATAGAATTAGTTATGGAGGATAAGTATTCATCCAACTCAGGAAA...

XM_057913105.1
TAGCTCATTGTTTCCAATGCATTTTATACAGCTATTTTGCTTTTAAAAACATGAAGCATTGATCATAAATATTTATTTGGCAACTGTACAGCTTGCATTGAAAGCTCATTTCAATCTGTTTTTTTTTTTTTTTTCGTTCAAGATGAATTTTAATAGGTATTTATCATTATAAAGCACATTTCTACGCAGACTCACACAACAAGGGAATCAATAGAATTAGTTATGGAGGATAAGTATTCATCCAACTCAGGAAATCAGCA...

CDS

2 records

下载 CDS FASTA

LOC130989166
ATGGAGGATAAGTATTCATCCAACTCAGGAAATCAGCATGGAAGCAGAGGGAATTTCGTCACCATTCTTAGCATTGATGGCGGAGGTGTAAGAGGAATCATCCCTGGAGTTATACTCGCTTACTTGGAATCCCAGTTGCAGGAGCTAGATGGTGAAGATGCAAGACTTGCAAATTATTTCGATGTGATAGCAGGAACAAGTACAGGTGGTCTTGTAACGGCGATGCTAACGGCACCTGATTCAAACAATCAACCTCTTTA...

Protein

2 records

下载 Protein FASTA

XP_057769087.1
MEDKYSSNSGNQHGSRGNFVTILSIDGGGVRGIIPGVILAYLESQLQELDGEDARLANYFDVIAGTSTGGLVTAMLTAPDSNNQPLYSAKDIVPFYLQQCPKIFPQPRGLFAGLIGTLKAFAGPKYDGKYIRTLTREILGDLRLHQTLTNVVVPTFDIKKLQPVIFSSYTQAEKNSTMDALLSDICISTSAAPTALPPHYFENQGDAFNLIDGGIAANNPTLVAISEVTREISNHNSGSDDPMDLRRVLVVSLGTGARKN...

XP_057769088.1
MEDKYSSNSGNQHGSRGNFVTILSIDGGGVRGIIPGVILAYLESQLQELDGEDARLANYFDVIAGTSTGGLVTAMLTAPDSNNQPLYSAKDIVPFYLQQCPKIFPQPRGLFAGLIGTLKAFAGPKYDGKYIRTLTREILGDLRLHQTLTNVVVPTFDIKKLQPVIFSSYTAEKNSTMDALLSDICISTSAAPTALPPHYFENQGDAFNLIDGGIAANNPTLVAISEVTREISNHNSGSDDPMDLRRVLVVSLGTGARKNE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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