Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G002372`

染色体: Chr06 坐标: 34564036-34568701 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G002372`
名称	SmilChr06G002372
描述	putative receptor-like protein kinase At5g39000
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	34564036 - 34568701 / `+`

ID 对照

NCBI Gene ID	`LOC130989187`
GeneID	`130989187`
locus_tag	`-`
NCBI Name	`LOC130989187`
原始查询	`LOC130989187`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative receptor-like protein kinase At5g39000
产物	putative receptor-like protein kinase At5g39000
Arabidopsis	`AT5G39000` (AT5G39000) Malectin/receptor-like protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:833892] identity=31.8; qcov=0.642; evalue=4.63e-59; confidence=low
Rice	`Os05g0280700` (YK11) - identity=33.5; qcov=0.56; evalue=1.3e-53; confidence=low
GO	GO:0003677 (DNA binding); GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006355 (regulation of DNA-templated transcription); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF02365 (NAM); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:130989187

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.40000	`XP_057769110.1`
2	Nucleus	细胞核	0.20000	`XP_057769110.1`
3	Cytoplasm	细胞质	0.20000	`XP_057769110.1`
4	Endoplasmic reticulum	内质网	0.20000	`XP_057769110.1`
5	Chromosome	染色体	0.00000	`XP_057769110.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:34564258`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B38
`Chr6:34564258`	`GC`	`G`	1bp_deletion	CDS_variant	1	B38
`Chr6:34564281`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A16,C26
`Chr6:34565301`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C51
`Chr6:34565494`	`TA`	`T`	1bp_deletion	frameshift_variant	1	D11
`Chr6:34565494`	`TA`	`T`	1bp_deletion	CDS_variant	1	D11
`Chr6:34565741`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr6:34565791`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B118,B20,B22,B43
`Chr6:34566104`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr6:34566127`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr6:34566156`	`C`	`T`	EMS_canonical_SNV	stop_gained	30	A4,B111,B135,B138,B16,B44,B45,B50,B51,B56,B63,B64,B7,B80,B83,B84,B94,B96,C10,C32,C34,C35,C49,C5,C53,C55,C58,C84,D6,D9
`Chr6:34566247`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B17

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769110.1

884 aa

442

884

PK_Tyr_Ser-Thr

Pkinase

NAM

PF07714 PK_Tyr_Ser-Thr 327-536 aa PF00069 Pkinase 328-564 aa PF02365 NAM 579-666 aa

XP_057769111.1

822 aa

411

822

PK_Tyr_Ser-Thr

Pkinase

NAM

PF07714 PK_Tyr_Ser-Thr 327-536 aa PF00069 Pkinase 328-564 aa PF02365 NAM 579-665 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769110.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	327	536	1.2e-35	123.9	Protein tyrosine and serine/threonine kinase
`XP_057769110.1`	Pfam	`PF00069`	Pkinase	Domain	328	564	2.4e-41	142.6	Protein kinase domain
`XP_057769110.1`	Pfam	`PF02365`	NAM	Family	579	666	1.9e-18	67.8	No apical meristem (NAM) protein
`XP_057769111.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	327	536	9.8e-36	124.1	Protein tyrosine and serine/threonine kinase
`XP_057769111.1`	Pfam	`PF00069`	Pkinase	Domain	328	564	1.4e-38	133.6	Protein kinase domain
`XP_057769111.1`	Pfam	`PF02365`	NAM	Family	579	665	1.7e-18	68.0	No apical meristem (NAM) protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057913127.1
GACTTGGCAAAACCGCCTTTTTTTTATTGGAGACTCTGAATTGACCCTCAACTTCACCATTACCGTACTATCATCTCATCTTCGAGAAATCAGAATCAGAATCACTTTGATATGCTGCACAATCATATGATCATCGTCTTCCTCGTGATTTCTATCGGCCGTCTAGGCGCCGCTGTGGATCCTAATTGCATTTCGATCAACCGCGACGGCGGAGCTGCACCGGCGACCGGAAAATGGCACCGCGACGCTGCACCAAAGGG...

XM_057913128.1
GACTTGGCAAAACCGCCTTTTTTTTATTGGAGACTCTGAATTGACCCTCAACTTCACCATTACCGTACTATCATCTCATCTTCGAGAAATCAGAATCAGAATCACTTTGATATGCTGCACAATCATATGATCATCGTCTTCCTCGTGATTTCTATCGGCCGTCTAGGCGCCGCTGTGGATCCTAATTGCATTTCGATCAACCGCGACGGCGGAGCTGCACCGGCGACCGGAAAATGGCACCGCGACGCTGCACCAAAGGG...

CDS

2 records

下载 CDS FASTA

LOC130989187
ATGCTGCACAATCATATGATCATCGTCTTCCTCGTGATTTCTATCGGCCGTCTAGGCGCCGCTGTGGATCCTAATTGCATTTCGATCAACCGCGACGGCGGAGCTGCACCGGCGACCGGAAAATGGCACCGCGACGCTGCACCAAAGGGCTCATCAACCACCTCAACTGTCAAGGGAGACCTCATCACGGCCGTCGATCCCGTTCCCGCTCGAATTTCCTCATCCCAATTTTCCTTCTCTTTCCAGCCGAGTCCAGGTAG...

Protein

2 records

下载 Protein FASTA

XP_057769110.1
MLHNHMIIVFLVISIGRLGAAVDPNCISINRDGGAAPATGKWHRDAAPKGSSTTSTVKGDLITAVDPVPARISSSQFSFSFQPSPGRDTSEVDVYVDNSTSLERVHYQHIKWGPVSAGDDIASMFGMWAEPTIKENAEMATNKTWRVSVDVGFKYVVRLHLCEAGLEMDFVLLINNMIFLTSADMLQQRENRNFLWYNNYVVMVEGLKQEGNRDISISLHSHHEFLDRHGPLEGFEVFKLSNHDGNLASPSLVIPVQDSP...

XP_057769111.1
MLHNHMIIVFLVISIGRLGAAVDPNCISINRDGGAAPATGKWHRDAAPKGSSTTSTVKGDLITAVDPVPARISSSQFSFSFQPSPGRDTSEVDVYVDNSTSLERVHYQHIKWGPVSAGDDIASMFGMWAEPTIKENAEMATNKTWRVSVDVGFKYVVRLHLCEAGLEMDFVLLINNMIFLTSADMLQQRENRNFLWYNNYVVMVEGLKQEGNRDISISLHSHHEFLDRHGPLEGFEVFKLSNHDGNLASPSLVIPVQDSP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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