Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G002377

染色体: Chr06 坐标: 34622784-34626142 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G002377
名称SmilChr06G002377
描述uncharacterized SmilChr06G002377
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向34622784 - 34626142 / -

ID 对照

NCBI Gene IDLOC130989199
GeneID130989199
locus_tag-
NCBI NameLOC130989199
原始查询LOC130989199

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述integral membrane hemolysin-III-like protein [Source:NCBI gene (formerly Entrezgene);Acc:829985]; symbol=AT4G38280; hit=AT4G38280; species=arabidopsis; confidence=medium
产物integral membrane hemolysin-III-like protein [Source:NCBI gene (formerly Entrezgene);Acc:829985]; symbol=AT4G38280; hit=AT4G38280; species=arabidopsis; confidence=medium
ArabidopsisAT4G38280 (AT4G38280)
integral membrane hemolysin-III-like protein [Source:NCBI gene (formerly Entrezgene);Acc:829985]
identity=35.5; qcov=0.707; evalue=2.07e-21; confidence=medium
RiceOs09g0549400
-
identity=49.2; qcov=0.247; evalue=9.23e-14; confidence=weak
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130989199

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057769124.1
2 Chromosome 染色体 0.20000 XP_057769124.1
3 Centromere 着丝粒 0.00000 XP_057769124.1
4 Chromatin 染色质 0.00000 XP_057769124.1
5 Telomere 端粒 0.00000 XP_057769124.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr6:34623186 C T EMS_canonical_SNV stop_gained 39 A19,A20,A3,B100,B110,B113,B114,B12,B128,B13,B134,B137,B16,B29,B51,B55,B84,B86,C17,C18,C19,C2,C27,C35,C37,C44,C48,C53,C63,C64,C66,C81,C83,C9,D10,D11,D3,D6,D8
Chr6:34624128 G A EMS_canonical_SNV CDS_variant 5 B139,B52,B82,C20,D4
Chr6:34624130 C T EMS_canonical_SNV CDS_variant 1 C66
Chr6:34624138 C T EMS_canonical_SNV CDS_variant 5 A21,B101,C2,C32,C68
Chr6:34624315 G A EMS_canonical_SNV CDS_variant 1 D11
Chr6:34624822 C T EMS_canonical_SNV CDS_variant 1 B86

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057913141.1
TTTTGATGTGAATAACAAGGCATTTTGATTTAATGGAACAACACGAAATATTATGAATAAAAAACGTGTTTTAAAGCTGAAGTTGAAGAGATGAAAGAAAGAAACTGTGGAGAAAACCGCTGCAGAGATTGCGCGCATTCAACACTTCTCCGCCAAACTGCTTTTTTTTTTTTGTTTATTACCAAAGTCTCTCTCTCTCTCTCTCTGTATTTTTGTGTGTCCGCGGATGAATCTGTGGCTACGCAGGGGCTATGCCGTCA...
XM_057913143.1
AGAGATGAAAGAAAGAAACTGTGGAGAAAACCGCTGCAGAGATTGCGCGCATTCAACACTTCTCCGCCAAACTGCTTTTTTTTTTTTGTTTATTACCAAAGTCTCTCTCTCTCTCTCTCTGTATTTTTGTGTGTCCGCGGATGAATCTGTGGCTACGCAGGGGCTATGCCGTCAGCCTCAAGTAATACGATTGTGCACCGCTAGTATCTGCAATCTTATTCTCGTCTTCGCCTCTTCAAATTTCCCAATCATTTGCGCAA...

CDS

4 records

下载 CDS FASTA
LOC130989199
ATGGTTCAACAAACAAAAGATTCTACATTTACTGAATACGGGCTTGCTCATGCTGAATCTGGTCTGTCGAATCCTGATAAGCAACTTTCCATCTCTATAGCCACAAAGAGAACAGAACTGCTTGGTTCCCGTAATGAAAGCCCAATGGCCGTGTCTAAATCTATTGGAAGCCAGTTCCCTGTGGAGACTAGTGAAAGTGTTGGTGAATCTGTCAAGATTTCTGGAACCAAAAGGCCCATACGGAGCCCTCCAAAAATTAA...
LOC130989199
ATGGTTCAACAAACAAAAGATTCTACATTTACTGAATACGGGCTTGCTCATGCTGAATCTGGTCTGTCGAATCCTGATAAGCAACTTTCCATCTCTATAGCCACAAAGAGAACAGAACTGCTTGGTTCCCGTAATGAAAGCCCAATGGCCGTGTCTAAATCTATTGGAAGCCAGTTCCCTGTGGAGACTAGTGAAAGTGTTGGTGAATCTGTCAAGATTTCTGGAACCAAAAGGCCCATACGGAGCCCTCCAAAAATTAA...

Protein

4 records

下载 Protein FASTA
XP_057769124.1
MVQQTKDSTFTEYGLAHAESGLSNPDKQLSISIATKRTELLGSRNESPMAVSKSIGSQFPVETSESVGESVKISGTKRPIRSPPKINGGSGHIVYVRRKPELELAKSNLSDTQLNAANYPDTKKSVNQDDTTQQLTGKNEPVMCVSDAAPLPRASSPSFSSTRRSISPSLGVSSNISSPENIKHGDVNCIKPSPEDPKMASVNIWEEQYSHLQSLLKTLDQSDQYEYVQMLRSLSSVELSRHAVELEKRSIKLSLDEAKE...
XP_057769125.1
MVQQTKDSTFTEYGLAHAESGLSNPDKQLSISIATKRTELLGSRNESPMAVSKSIGSQFPVETSESVGESVKISGTKRPIRSPPKINGGSGHIVYVRRKPELELAKSNLSDTQLNAANYPDTKKSVNQDDTTQQLTGKNEPVMCVSDAAPLPRASSPSFSSTRRSISPSLGVSSNISSPENIKHGDVNCIKPSPEDPKMASVNIWEEQYSHLQSLLKTLDQSDQYEYVQMLRSLSSVELSRHAVELEKRSIKLSLDEAKE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器