Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G002426`

染色体: Chr06 坐标: 34994753-34997234 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G002426`
名称	SmilChr06G002426
描述	uncharacterized SmilChr06G002426
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	34994753 - 34997234 / `-`

ID 对照

NCBI Gene ID	`LOC130989233`
GeneID	`130989233`
locus_tag	`-`
NCBI Name	`LOC130989233`
原始查询	`LOC130989233`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	coiled-coil protein [Source:NCBI gene (formerly Entrezgene);Acc:838189]; symbol=AT1G16210; hit=AT1G16210; species=arabidopsis; confidence=high
产物	coiled-coil protein [Source:NCBI gene (formerly Entrezgene);Acc:838189]; symbol=AT1G16210; hit=AT1G16210; species=arabidopsis; confidence=high
Arabidopsis	`AT1G16210` (AT1G16210) coiled-coil protein [Source:NCBI gene (formerly Entrezgene);Acc:838189] identity=73.9; qcov=0.978; evalue=7.74e-110; confidence=high
Rice	`Os04g0561600` - identity=69.7; qcov=1.01; evalue=8.68e-83; confidence=high
GO	GO:0003713 (transcription coactivator activity); GO:0005634 (nucleus); GO:0006366 (transcription by RNA polymerase II)
KEGG	-
Pfam	PF06244 (Ccdc124)
InterPro	-
eggNOG	-
NR	GeneID:130989233

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057769168.1`
2	Nucleus	细胞核	0.80000	`XP_057769169.1`
3	Cytoplasm	细胞质	0.80000	`XP_057769168.1`
4	Nucleoplasm	核质	0.60000	`XP_057769169.1`
5	Cytoskeleton	细胞骨架	0.20000	`XP_057769168.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:34996032`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B113,B132,B72,C3,C7
`Chr6:34996455`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B62
`Chr6:34996655`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B62
`Chr6:34996779`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A23,B131,C59,D10
`Chr6:34996814`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	C17,C27,C63,D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769168.1

232 aa

116

232

Ccdc124

PF06244 Ccdc124 146-226 aa

XP_057769169.1

231 aa

116

231

Ccdc124

PF06244 Ccdc124 146-226 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769168.1`	Pfam	`PF06244`	Ccdc124	Family	146	226	5.5e-33	113.9	Coiled-coil domain-containing protein 124 /Oxs1
`XP_057769169.1`	Pfam	`PF06244`	Ccdc124	Family	146	226	5.4e-33	113.9	Coiled-coil domain-containing protein 124 /Oxs1

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057913186.1
GAATTATACTCCGGGTCCAGGCCCTTCATGGCCAACTATAAATTATATTGGGCCGTGACCGAAAAGGTCCAGCTCTCACCGACTCTCTCATTTCGTTTATTTTTTGATGTTTTGATTTCTGATCTCTAGTCGATTTTGTACGCGTAAGATTCCATTCGATTCGATTCAATTCAATTCCCAATTCCAATCAACACAATCCGCCGATAGTTGGCACAAATTTATCAAAATTTTGTTGTGTAGAGCAGATTTAATCCGAGAAA...

XM_057913185.1
CAGCTCTCACCGACTCTCTCATTTCGTTTATTTTTTGATGTTTTGATTTCTGATCTCTAGTCGATTTTGTACGCGTAAGATTCCATTCGATTCGATTCAATTCAATTCCCAATTCCAATCAACACAATCCGCCGATAGTTGGCACAAATTTATCAAAATTTTGTTGTGTAGAGCAGATTTAATCCGAGAAAAATCGTCGAAAATGCCGAAGAAAATGGGTGTCAACAGCAAAGCCGAAGCAGCTAGGGCACGGAGGAGCG...

CDS

2 records

下载 CDS FASTA

LOC130989233
ATGCCGAAGAAAATGGGTGTCAACAGCAAAGCCGAAGCAGCTAGGGCACGGAGGAGCGCCACGGAGTCGGAGCGGAAGGAGCGCGAGGCGAAGGAGAAGGAAGAGCAGTACTGGCGCGAAGCGGAGGGAAACAAGCCGCGAGCGGCGAAGAAGCGGGAGGAGGAAGCCGAGAAGCGAGCCGAGGCAAACGCGCGGAAGGCCGAGGTGCGCCGATTGGCGGAGCTGGAGGAGAAGGAGCTGGAGAAGAGCCTGATGAAGCC...

Protein

2 records

下载 Protein FASTA

XP_057769168.1
MPKKMGVNSKAEAARARRSATESERKEREAKEKEEQYWREAEGNKPRAAKKREEEAEKRAEANARKAEVRRLAELEEKELEKSLMKPDKKANRVAVPLPKVTEAELSRRKEEDQAALQRRAEEDKRKQSRTAKEEEYERMVSVENTNRDDSIIEARSVDEALARMTLVDSLPVDKHPEKRLKASFKAFEEAELPKLKAEKPGLTHTQYKDMIWKLWKKSPDNPLNQVTTNIF

XP_057769169.1
MPKKMGVNSKAEAARARRSATESERKEREAKEKEEQYWREAEGNKPRAAKKREEEAEKRAEANARKAEVRRLAELEEKELEKSLMKPDKKANRVAVPLPKVTEAELSRRKEEDQAALQRRAEEDKRKQSRTAKEEEYERMVSVENTNRDDSIIEARSVDEALARMTLVDSLPVDKHPEKRLKASFKAFEEAELPKLKAEKPGLTHTQYKDMIWKLWKKSPDNPLNQVAEKA

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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