Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G002446`

染色体: Chr06 坐标: 35207015-35210927 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G002446`
名称	SmilChr06G002446
描述	uncharacterized SmilChr06G002446
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	35207015 - 35210927 / `+`

ID 对照

NCBI Gene ID	`LOC130989250`
GeneID	`130989250`
locus_tag	`-`
NCBI Name	`LOC130989250`
原始查询	`LOC130989250`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829666]; symbol=AT4G35140; hit=AT4G35140; species=arabidopsis; confidence=high
产物	Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829666]; symbol=AT4G35140; hit=AT4G35140; species=arabidopsis; confidence=high
Arabidopsis	`AT4G35140` (AT4G35140) Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829666] identity=58; qcov=0.994; evalue=0; confidence=high
Rice	`Os10g0544500` (OsWD40-180) - identity=57; qcov=0.917; evalue=1.37e-170; confidence=high
GO	GO:0005515 (protein binding); GO:0005737 (cytoplasm); GO:0080008 (Cul4-RING E3 ubiquitin ligase complex)
KEGG	-
Pfam	PF00400 (WD40)
InterPro	-
eggNOG	-
NR	GeneID:130989250

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057769191.1`
2	Cytoplasm	细胞质	1.00000	`XP_057769191.1`
3	Cytosol	细胞质基质	0.60000	`XP_057769189.1`
4	Nucleoplasm	核质	0.20000	`XP_057769193.1`
5	Chromosome	染色体	0.00000	`XP_057769189.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:35207421`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B107,B66,B98
`Chr6:35208089`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A19,B32
`Chr6:35208354`	`C`	`CA`	1bp_insertion	frameshift_variant	2	B23,C49
`Chr6:35208354`	`C`	`CA`	1bp_insertion	CDS_variant	2	B23,C49
`Chr6:35208419`	`G`	`GT`	1bp_insertion	frameshift_variant	2	B23,C49
`Chr6:35208419`	`G`	`GT`	1bp_insertion	CDS_variant	2	B23,C49
`Chr6:35208480`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A23,B131,C59
`Chr6:35209293`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr6:35209954`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr6:35209972`	`G`	`GAT`	2bp_insertion	frameshift_variant	2	B23,C49
`Chr6:35209972`	`G`	`GAT`	2bp_insertion	CDS_variant	2	B23,C49
`Chr6:35210127`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A23

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769189.1

667 aa

334

667

WD40

PF00400 WD40 48-83 aa PF00400 WD40 366-403 aa PF00400 WD40 408-444 aa

XP_057769191.1

627 aa

314

627

WD40

PF00400 WD40 48-83 aa PF00400 WD40 326-363 aa PF00400 WD40 368-404 aa

XP_057769192.1

594 aa

297

594

WD40

PF00400 WD40 15-50 aa PF00400 WD40 293-330 aa PF00400 WD40 335-371 aa

XP_057769193.1

482 aa

241

482

WD40

PF00400 WD40 48-83 aa PF00400 WD40 326-363 aa PF00400 WD40 368-404 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769189.1`	Pfam	`PF00400`	WD40	Repeat	48	83	6.2e-26	90.4	WD domain, G-beta repeat
`XP_057769189.1`	Pfam	`PF00400`	WD40	Repeat	366	403	6.2e-26	90.4	WD domain, G-beta repeat
`XP_057769189.1`	Pfam	`PF00400`	WD40	Repeat	408	444	6.2e-26	90.4	WD domain, G-beta repeat
`XP_057769191.1`	Pfam	`PF00400`	WD40	Repeat	48	83	2.1e-26	91.9	WD domain, G-beta repeat
`XP_057769191.1`	Pfam	`PF00400`	WD40	Repeat	326	363	2.1e-26	91.9	WD domain, G-beta repeat
`XP_057769191.1`	Pfam	`PF00400`	WD40	Repeat	368	404	2.1e-26	91.9	WD domain, G-beta repeat
`XP_057769192.1`	Pfam	`PF00400`	WD40	Repeat	15	50	1.4e-26	92.4	WD domain, G-beta repeat
`XP_057769192.1`	Pfam	`PF00400`	WD40	Repeat	293	330	1.4e-26	92.4	WD domain, G-beta repeat
`XP_057769192.1`	Pfam	`PF00400`	WD40	Repeat	335	371	1.4e-26	92.4	WD domain, G-beta repeat
`XP_057769193.1`	Pfam	`PF00400`	WD40	Repeat	48	83	2.9e-27	94.6	WD domain, G-beta repeat
`XP_057769193.1`	Pfam	`PF00400`	WD40	Repeat	326	363	2.9e-27	94.6	WD domain, G-beta repeat
`XP_057769193.1`	Pfam	`PF00400`	WD40	Repeat	368	404	2.9e-27	94.6	WD domain, G-beta repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057913208.1
TTTGGTAAATGCAAAACATTTTTTTTTTGAGAAGAAAACATTTCTTTTTTGAATTAAGCAAAAGCAAAACATTTAATCTTCCTCAGACAACCCACCCCTCCGTTTCGCAAAACTGCAAACATTTCACCCCTCTCTCTCGCTCTCTCTGTGTCTCTCACACACACACACACGCATAACCCACAATCTGGAAATGTTTGGGTGTTCAAGAAAATCAATGATTGAATTTTAATTTTGATTGTGCCGCCAGCGCTATAATTTGC...

XM_057913210.1
TTTGGTAAATGCAAAACATTTTTTTTTTGAGAAGAAAACATTTCTTTTTTGAATTAAGCAAAAGCAAAACATTTAATCTTCCTCAGACAACCCACCCCTCCGTTTCGCAAAACTGCAAACATTTCACCCCTCTCTCTCGCTCTCTCTGTGTCTCTCACACACACACACACGCATAACCCACAATCTGGAAATGTTTGGGTGTTCAAGAAAATCAATGATTGAATTTTAATTTTGATTGTGCCGCCAGCGCTATAATTTGC...

CDS

4 records

下载 CDS FASTA

LOC130989250
ATGGCGACGAAGAAGAGAGCGAGAACAAGTTTCGATTCGGCGATTGTGGATGTATGGAGACGTGAACTCGGCCAACTTTCCTCTAGAAACTTCACAAACAGGCTTGCCGCCTCTGAGGATCTAGTGCTTCGTCTTGATGTCTTGCGAAAACTAGATAGACACCGTGGATGCGTGAACACCATTTGTTTCAATGAGGCCGGTGATATTCTTGTATCGGGTTCTGATGATAGAAAGATCATACTATGGGACTGGGAATCTGG...

Protein

4 records

下载 Protein FASTA

XP_057769189.1
MATKKRARTSFDSAIVDVWRRELGQLSSRNFTNRLAASEDLVLRLDVLRKLDRHRGCVNTICFNEAGDILVSGSDDRKIILWDWESGRVKLSFHSGHANNVFQAKFMPYSEDQSIVTCAADGQVICFFYLSLAHPNPMMRTTTATYFINFLKILLKQVSFYIQVRHARIRESGVETKLLAEHDGRVHKLAIEPGSPHIFFTCGEDGSVQHIDLRTESATSLFTCKPLLPHKFFRTLHLNAITIDPRNPNLFAVGGSDSFA...

XP_057769191.1
MATKKRARTSFDSAIVDVWRRELGQLSSRNFTNRLAASEDLVLRLDVLRKLDRHRGCVNTICFNEAGDILVSGSDDRKIILWDWESGRVKLSFHSGHANNVFQAKFMPYSEDQSIVTCAADGQVRHARIRESGVETKLLAEHDGRVHKLAIEPGSPHIFFTCGEDGSVQHIDLRTESATSLFTCKPLLPHKFFRTLHLNAITIDPRNPNLFAVGGSDSFARVYDIRKYKWDGSAEFGQPADYFCPSHLVDDLSVGITGLA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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