Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G002450

染色体: Chr06 坐标: 35249268-35255869 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G002450
名称SmilChr06G002450
描述uncharacterized SmilChr06G002450
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向35249268 - 35255869 / -

ID 对照

NCBI Gene IDLOC130989253
GeneID130989253
locus_tag-
NCBI NameLOC130989253
原始查询LOC130989253

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述Major facilitator superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:834226]; symbol=AT5G42210; hit=AT5G42210; species=arabidopsis; confidence=medium
产物Major facilitator superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:834226]; symbol=AT5G42210; hit=AT5G42210; species=arabidopsis; confidence=medium
ArabidopsisAT5G42210 (AT5G42210)
Major facilitator superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:834226]
identity=44.7; qcov=0.972; evalue=1.48e-94; confidence=medium
RiceOs11g0151500 (OsENA1)
-
identity=32.8; qcov=0.95; evalue=1.73e-55; confidence=low
GOGO:0022857 (transmembrane transporter activity); GO:0055085 (transmembrane transport)
KEGG-
PfamPF07690 (MFS_1)
InterPro-
eggNOG-
NRGeneID:130989253

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Vacuole 液泡 0.80000 XP_057769196.1
2 Vacuole membrane 液泡膜 0.80000 XP_057769197.1
3 Cytoplasmic vesicle 细胞质囊泡 0.20000 XP_057769196.1
4 Cell membrane 细胞膜 0.20000 XP_057769196.1
5 Nucleus 细胞核 0.00000 XP_057769197.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr6:35249505 AG A 1bp_deletion frameshift_variant 8 B135,B56,B63,B83,B93,C19,C59,C77
Chr6:35252479 C T EMS_canonical_SNV CDS_variant 1 B62
Chr6:35253146 G A EMS_canonical_SNV CDS_variant 2 A10,C86
Chr6:35253869 C T EMS_canonical_SNV CDS_variant 3 B107,B66,B98
Chr6:35255781 TAA T 2bp_deletion frameshift_variant 1 B139
Chr6:35255781 TAA T 2bp_deletion CDS_variant 1 B139

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057769196.1
438 aa
N
1
219
438
MFS_1
C
PF07690 MFS_1 11-378 aa
XP_057769197.1
359 aa
N
1
180
359
MFS_1
C
PF07690 MFS_1 2-299 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057769196.1 Pfam PF07690 MFS_1 Family 11 378 4.5e-26 92.3 Major Facilitator Superfamily
XP_057769197.1 Pfam PF07690 MFS_1 Family 2 299 4.7e-17 62.7 Major Facilitator Superfamily

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057913214.1
GAGTGCAATGGAGAATTGGAAGAATTTAATGCACGTATTTGTGACGATATTTTTATCAAATTTTGCGTCGTTGATAGTGAATCCGACAATCGCAGACGTCACCATGGAAGCTGTATGCCCCGGAAAAGATGAATGCTCGCTCTCCATTTATCTCTCTGGATTCCAACAAGCTTAATATTGGCTGTGAAGAGGACGACGGAGTTTTTCTACGTGTACTACGTCGTGAAGACTCTAACGTCTATAGTAACGGATGGTGGCAT...
XM_057913213.1
ACAGAAGGGAGAAACCAGAGGTTTGTGTGAGAGAGAGTGCAATGGAGAATTGGAAGAATTTAATGCACGTATTTGTGACGATATTTTTATCAAATTTTGCGTCGTTGATAGTGAATCCGACAATCGCAGACGTCACCATGGAAGCTGTATGCCCCGGAAAAGATGAATGCTCGCTCTCCATTTATCTCTCTGGATTCCAACAAGCTATTTCAGGATTGGCTTCTGTGGTTATGATGCCATTGATTGGAAATTTATCCGAC...

CDS

2 records

下载 CDS FASTA
LOC130989253
ATGGAGAATTGGAAGAATTTAATGCACGTATTTGTGACGATATTTTTATCAAATTTTGCGTCGTTGATAGTGAATCCGACAATCGCAGACGTCACCATGGAAGCTGTATGCCCCGGAAAAGATGAATGCTCGCTCTCCATTTATCTCTCTGGATTCCAACAAGCTATTTCAGGATTGGCTTCTGTGGTTATGATGCCATTGATTGGAAATTTATCCGACACCTATGGTCGAAAACTCTTGCTCACAATCCCTTTAACCCT...
LOC130989253
ATGCTCGCTCTCCATTTATCTCTCTGGATTCCAACAAGCTTAATATTGGCTGTGAAGAGGACGACGGAGTTTTTCTACGTGTACTACGTCGTGAAGACTCTAACGTCTATAGTAACGGATGGTGGCATCATTTGTCTCACGCTCAGTTATATGGCTGATAATGTGTCGGAGGGAAAGCGTGTATCTGCATTTGGGATATTTTCCGGTGTGGTTTCAGCTGCAATGGTTTGTGGAACATTAACTGCTCGAATTCTTCCCAC...

Protein

2 records

下载 Protein FASTA
XP_057769196.1
MENWKNLMHVFVTIFLSNFASLIVNPTIADVTMEAVCPGKDECSLSIYLSGFQQAISGLASVVMMPLIGNLSDTYGRKLLLTIPLTLAIIPFVILAVKRTTEFFYVYYVVKTLTSIVTDGGIICLTLSYMADNVSEGKRVSAFGIFSGVVSAAMVCGTLTARILPTDRIYQVAAVIAVVAAVYMRIFLEDDRRTGCRKNEQPMLMSATEGDGNEPLKTNDLIKLPKDMYRLFKSSTTMSLASFVAFFNSLAEAGISAFLM...
XP_057769197.1
MLALHLSLWIPTSLILAVKRTTEFFYVYYVVKTLTSIVTDGGIICLTLSYMADNVSEGKRVSAFGIFSGVVSAAMVCGTLTARILPTDRIYQVAAVIAVVAAVYMRIFLEDDRRTGCRKNEQPMLMSATEGDGNEPLKTNDLIKLPKDMYRLFKSSTTMSLASFVAFFNSLAEAGISAFLMYFLKARFHFQKDQFADIWLITYTAATFSSMVLMPLLGPIIGEETLLCIGLFAGFWQMLLNSIAWAPWVAYASAFLGVFL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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