Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G002475`

染色体: Chr06 坐标: 35588075-35590232 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G002475`
名称	SmilChr06G002475
描述	probable polyamine transporter At1g31830
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	35588075 - 35590232 / `+`

ID 对照

NCBI Gene ID	`LOC130989272`
GeneID	`130989272`
locus_tag	`-`
NCBI Name	`LOC130989272`
原始查询	`LOC130989272`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable polyamine transporter At1g31830
产物	probable polyamine transporter At1g31830
Arabidopsis	`AT1G31830` (PUT2) Amino acid permease family protein [Source:NCBI gene (formerly Entrezgene);Acc:840073] identity=71.1; qcov=0.987; evalue=0; confidence=high
Rice	`Os03g0576900` (OsPUT3) - identity=70.4; qcov=0.998; evalue=0; confidence=high
GO	GO:0016020 (membrane); GO:0022857 (transmembrane transporter activity); GO:0055085 (transmembrane transport)
KEGG	-
Pfam	PF00324 (AA_permease); PF13520 (AA_permease_2)
InterPro	-
eggNOG	-
NR	GeneID:130989272

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vesicle	囊泡	1.00000	`XP_057769211.1`
2	Secretory vesicle	Secretory vesicle	0.60000	`XP_057769211.1`
3	Golgi apparatus	高尔基体	0.40000	`XP_057769209.1`
4	Vacuole membrane	液泡膜	0.40000	`XP_057769209.1`
5	Cytoplasmic vesicle	细胞质囊泡	0.40000	`XP_057769211.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:35588701`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A1,A14,C23,C54
`Chr6:35589089`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A15,C23,C83
`Chr6:35589121`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A3,B128,B77,C19
`Chr6:35589200`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B100,B125,C87
`Chr6:35589223`	`TA`	`T`	1bp_deletion	frameshift_variant	1	B112
`Chr6:35589223`	`TA`	`T`	1bp_deletion	CDS_variant	1	B112
`Chr6:35589407`	`CG`	`C`	1bp_deletion	frameshift_variant	1	B26
`Chr6:35589407`	`CG`	`C`	1bp_deletion	CDS_variant	1	B26
`Chr6:35589409`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:35589452`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C18
`Chr6:35589479`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B107,B66,B98
`Chr6:35589508`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B120,B139,B32,C36,C4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769209.1

489 aa

244

489

AA_permease_2

AA_permease

PF13520 AA_permease_2 61-434 aa PF00324 AA_permease 78-453 aa

XP_057769210.1

480 aa

240

480

AA_permease_2

AA_permease

PF13520 AA_permease_2 52-425 aa PF00324 AA_permease 69-444 aa

XP_057769211.1

460 aa

230

460

AA_permease_2

AA_permease

PF13520 AA_permease_2 32-405 aa PF00324 AA_permease 49-424 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769209.1`	Pfam	`PF13520`	AA_permease_2	Family	61	434	1.9e-37	129.9	Amino acid permease
`XP_057769209.1`	Pfam	`PF00324`	AA_permease	Domain	78	453	1e-20	74.6	Amino acid permease
`XP_057769210.1`	Pfam	`PF13520`	AA_permease_2	Family	52	425	1.8e-37	130.0	Amino acid permease
`XP_057769210.1`	Pfam	`PF00324`	AA_permease	Domain	69	444	1.7e-20	73.9	Amino acid permease
`XP_057769211.1`	Pfam	`PF13520`	AA_permease_2	Family	32	405	1.6e-37	130.2	Amino acid permease
`XP_057769211.1`	Pfam	`PF00324`	AA_permease	Domain	49	424	1.3e-20	74.2	Amino acid permease

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057913226.1
ATTAGAATCCCAAAACGCTTTACCTTCTTGATCGAAAGTCGTGGTTTCAGTGTCTGAAGTAGTGAGCTCCAAAGCGACGTCGTATACTGCAGCTCCACCTTCGCATGGAATTGAGACGTGGCAGCTCATGGTGATGGCGCCAGCAGCGGCATTCTCCGCTTCTGCTGCCATGAAGAAACGATCCTCAGCAGTAAAGCTAACAACATCAACCAAGATGCCAGAGGCCAATGACGCAGGATACGGGCGATTGGAGGAAGGAA...

XM_057913228.1
TATAAAATTGCATTCATTTTTATTCTCTGTCTAGGAAAAAATTTCATCTTGATAAATGGATTGGATCCTTTATTTCGCACATTTCGTTTCCTATATCTGTGTTGCGCTTGCATCAAATTGGTAAGAAACGATCCTCAGCAGTAAAGCTAACAACATCAACCAAGATGCCAGAGGCCAATGACGCAGGATACGGGCGATTGGAGGAAGGAATCTCTCCAAAATCGAACAATTACGCCAAGGTTTCGATCGTGCCACTTGTT...

CDS

3 records

下载 CDS FASTA

LOC130989272
ATGGTGATGGCGCCAGCAGCGGCATTCTCCGCTTCTGCTGCCATGAAGAAACGATCCTCAGCAGTAAAGCTAACAACATCAACCAAGATGCCAGAGGCCAATGACGCAGGATACGGGCGATTGGAGGAAGGAATCTCTCCAAAATCGAACAATTACGCCAAGGTTTCGATCGTGCCACTTGTTTTCCTAATATTCTACGAGGTATCAGGAGGGCCATTTGGTGTTGAAGACAGTGTTCAAGCAGCTGGCCCTCTTCTAGC...

LOC130989272
ATGTTGTTACTTGAAGGAAAGAAACGATCCTCAGCAGTAAAGCTAACAACATCAACCAAGATGCCAGAGGCCAATGACGCAGGATACGGGCGATTGGAGGAAGGAATCTCTCCAAAATCGAACAATTACGCCAAGGTTTCGATCGTGCCACTTGTTTTCCTAATATTCTACGAGGTATCAGGAGGGCCATTTGGTGTTGAAGACAGTGTTCAAGCAGCTGGCCCTCTTCTAGCATTGATGGGATTTCTTGTTTTCCCATT...

Protein

3 records

下载 Protein FASTA

XP_057769209.1
MVMAPAAAFSASAAMKKRSSAVKLTTSTKMPEANDAGYGRLEEGISPKSNNYAKVSIVPLVFLIFYEVSGGPFGVEDSVQAAGPLLALMGFLVFPFIWSVPEALVTAELGTMFPENGGYVVWVSSALGPYWGFQQGWMKWLSGVIDNALYPVLFLDYLKSGIPILADGLPRVAAVLGITAALTFMNYRGLTVVGWAAILLGVFSLMPFLVMGVVAVPKLEPSRWLVLDLNNVDWGLYLNTLFWNLNYWDSISTLAGEVDN...

XP_057769210.1
MLLLEGKKRSSAVKLTTSTKMPEANDAGYGRLEEGISPKSNNYAKVSIVPLVFLIFYEVSGGPFGVEDSVQAAGPLLALMGFLVFPFIWSVPEALVTAELGTMFPENGGYVVWVSSALGPYWGFQQGWMKWLSGVIDNALYPVLFLDYLKSGIPILADGLPRVAAVLGITAALTFMNYRGLTVVGWAAILLGVFSLMPFLVMGVVAVPKLEPSRWLVLDLNNVDWGLYLNTLFWNLNYWDSISTLAGEVDNPGRTLPRAL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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