当前解析结果
SmilChr01G003035| 统一新 Gene ID | SmilChr01G003035 |
|---|---|
| 名称 | SmilChr01G003035 |
| 描述 | pollen receptor-like kinase 4 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 49371610 - 49374044 / + |
| NCBI Gene ID | LOC130989295 |
|---|---|
| GeneID | 130989295 |
| locus_tag | - |
| NCBI Name | LOC130989295 |
| 原始查询 | LOC130989295 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pollen receptor-like kinase 4 |
| 产物 | pollen receptor-like kinase 4 |
| Arabidopsis | AT5G35390 (PRK1)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:833500] identity=47.4; qcov=0.974; evalue=0; confidence=high |
| Rice | Os08g0521200 (OsRLCK258)- identity=42; qcov=1; evalue=1.03e-163; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13516 (LRR_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989295 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057769243.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057769243.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057769243.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057769243.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057769243.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:49371882 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B90,B92 |
Chr1:49372143 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr1:49372336 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B16 |
Chr1:49372413 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B97 |
Chr1:49372458 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B98,C38 |
Chr1:49372588 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A22,B112,B32,B64,C5 |
Chr1:49372591 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B34,B79,C12 |
Chr1:49372603 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B112,B34,B64,C5 |
Chr1:49372608 |
TG |
T |
1bp_deletion | frameshift_variant | 3 | B34,B64,C5 |
Chr1:49372608 |
TG |
T |
1bp_deletion | CDS_variant | 3 | B34,B64,C5 |
Chr1:49372631 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B34,B64,C5 |
Chr1:49372638 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B34,B64,C5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057769243.1PF08263
LRRNT_2 49-91 aa
PF00560
LRR_1 168-188 aa
PF13516
LRR_6 211-226 aa
PF00560
LRR_1 213-235 aa
PF00069
Pkinase 387-643 aa
PF07714
PK_Tyr_Ser-Thr 387-644 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769243.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 49 | 91 | 4.2e-09 | 37.2 | Leucine rich repeat N-terminal domain |
XP_057769243.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 168 | 188 | 1.3e-13 | 48.9 | Leucine Rich Repeat |
XP_057769243.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 211 | 226 | 7.8e-06 | 26.3 | Leucine Rich repeat |
XP_057769243.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 213 | 235 | 1.3e-13 | 48.9 | Leucine Rich Repeat |
XP_057769243.1 |
Pfam | PF00069 |
Pkinase | Domain | 387 | 643 | 4e-24 | 86.1 | Protein kinase domain |
XP_057769243.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 387 | 644 | 3.4e-24 | 86.3 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。