当前解析结果
SmilChr01G003036| 统一新 Gene ID | SmilChr01G003036 |
|---|---|
| 名称 | SmilChr01G003036 |
| 描述 | uncharacterized SmilChr01G003036 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 49374189 - 49376325 / + |
| NCBI Gene ID | LOC130989343 |
|---|---|
| GeneID | 130989343 |
| locus_tag | - |
| NCBI Name | LOC130989343 |
| 原始查询 | LOC130989343 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:838248]; symbol=AT1G16770; hit=AT1G16770; species=arabidopsis; confidence=high |
| 产物 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:838248]; symbol=AT1G16770; hit=AT1G16770; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G16770 (AT1G16770)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:838248] identity=50.5; qcov=1.25; evalue=3.82e-97; confidence=high |
| Rice | Os02g0140800- identity=51; qcov=0.927; evalue=8.42e-59; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989343 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057769287.1 |
| 2 | Nucleoplasm | 核质 | 1.00000 | XP_057769287.1 |
| 3 | Cytoplasm | 细胞质 | 1.00000 | XP_057769287.1 |
| 4 | Cytosol | 细胞质基质 | 1.00000 | XP_057769287.1 |
| 5 | Nucleolus | 核仁 | 0.20000 | XP_057769287.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:49374577 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr1:49374817 |
T |
TG |
1bp_insertion | frameshift_variant | 4 | B114,B29,B65,C30 |
Chr1:49374817 |
T |
TG |
1bp_insertion | CDS_variant | 4 | B114,B29,B65,C30 |
Chr1:49374881 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C85 |
Chr1:49374924 |
C |
CAA |
2bp_insertion | frameshift_variant | 37 | A14,A15,A5,A6,A7,A8,B100,B109,B123,B134,B14,B3,B35,B37,B58,B60,B61,B79,B8,B84,B87,B95,B98,C14,C21,C43,C57,C61,C70,C71,C72,C73,C76,C78,C83,D1,D9 |
Chr1:49374971 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C36 |
Chr1:49374980 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C36 |
Chr1:49374989 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr1:49375011 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B91,C39,D11 |
Chr1:49375018 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B36 |
Chr1:49375070 |
CG |
C |
1bp_deletion | frameshift_variant | 13 | A5,B134,B37,B4,B61,B87,B95,C21,C61,C70,C76,C78,D9 |
Chr1:49375086 |
C |
T |
EMS_canonical_SNV | stop_gained | 58 | A1,A10,A14,A2,A21,A3,A4,A6,A8,A9,B10,B104,B109,B122,B123,B126,B131,B136,B138,B139,B2,B35,B40,B41,B5,B55,B6,B60,B63,B7,B72,B74,B80,B82,B87,B93,C12,C34,C36,C38,C39,C4,C50,C51,C52,C60,C63,C66,C69,C72,C78,C79,C80,C87,D2,D6,D8,D9 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。