Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G002619`

染色体: Chr06 坐标: 37704405-37711020 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G002619`
名称	SmilChr06G002619
描述	probable phospholipid-transporting ATPase 8
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	37704405 - 37711020 / `+`

ID 对照

NCBI Gene ID	`LOC130989375`
GeneID	`130989375`
locus_tag	`-`
NCBI Name	`LOC130989375`
原始查询	`LOC130989375`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable phospholipid-transporting ATPase 8
产物	probable phospholipid-transporting ATPase 8
Arabidopsis	`AT3G27870` (AT3G27870) ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein [Source:NCBI gene (formerly Entrezgene);Acc:822407] identity=70.6; qcov=0.983; evalue=0; confidence=high
Rice	`Os06g0565900` - identity=52.5; qcov=0.598; evalue=0; confidence=medium
GO	GO:0000287 (magnesium ion binding); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0016887 (ATP hydrolysis activity); GO:0045332 (phospholipid translocation); GO:0140326 (ATPase-coupled intramembrane lipid carrier activity)
KEGG	-
Pfam	PF13246 (Cation_ATPase); PF16209 (PhoLip_ATPase_N); PF16212 (PhoLip_ATPase_C)
InterPro	-
eggNOG	-
NR	GeneID:130989375

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057769318.1`
2	Endosome membrane	内体膜	0.60000	`XP_057769318.1`
3	Endoplasmic reticulum	内质网	0.60000	`XP_057769319.1`
4	Golgi apparatus	高尔基体	0.60000	`XP_057769319.1`
5	Endosome	内体	0.60000	`XP_057769319.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:37706297`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B15,B85,B94
`Chr6:37706612`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C32,C62
`Chr6:37706636`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C32,C62
`Chr6:37706711`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A19,B110,B86,D6
`Chr6:37707095`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B125,B31,B38,B7,C72
`Chr6:37707128`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr6:37707425`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A19,B110,B66,B86,D6
`Chr6:37707443`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A19,B110,B66,B86,D6
`Chr6:37707584`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B64,B83,C32
`Chr6:37707829`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A19,B66,B86,B98
`Chr6:37707832`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A19,B66,B86,B98
`Chr6:37707833`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B2,B32,C73,C87

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769318.1

1170 aa

585

1170

PhoLip_ATPase_N

Cation_ATPase

PhoLip_ATPase_C

PF16209 PhoLip_ATPase_N 40-105 aa PF13246 Cation_ATPase 516-712 aa PF16212 PhoLip_ATPase_C 890-1140 aa

XP_057769319.1

1049 aa

524

1049

Cation_ATPase

PhoLip_ATPase_C

PF13246 Cation_ATPase 395-591 aa PF16212 PhoLip_ATPase_C 769-1019 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769318.1`	Pfam	`PF16209`	PhoLip_ATPase_N	Family	40	105	2.6e-23	82.2	Phospholipid-translocating ATPase N-terminal
`XP_057769318.1`	Pfam	`PF13246`	Cation_ATPase	Family	516	712	8.2e-20	72.1	P-type ATPase, cytoplasmic domain N
`XP_057769318.1`	Pfam	`PF16212`	PhoLip_ATPase_C	Family	890	1140	1.2e-92	310.9	Phospholipid-translocating P-type ATPase C-terminal
`XP_057769319.1`	Pfam	`PF13246`	Cation_ATPase	Family	395	591	6.4e-20	72.4	P-type ATPase, cytoplasmic domain N
`XP_057769319.1`	Pfam	`PF16212`	PhoLip_ATPase_C	Family	769	1019	6.3e-93	311.8	Phospholipid-translocating P-type ATPase C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057913335.1
AATGAAAGGTCACAAACAAAATCATACTTATCAAAAATTAAGACTAATACAAATGGAGTTAGTATGCAAGAAATCTACGATGAGACATTAATTCTTTAAAGCATCAACAGTTTAATCATGCCAGCTGATGAACATTAACTAAAACCGAACAAATCTTCTCACTGTTTTTTTTTTGTTCTCATTCAGTCATCTTCACCCCCATTTCTTTCTGCTCACTGTTGATTCAAAATCCCCAAAGAAATTCGAGTCACAAGAGTTCC...

XM_057913336.1
CTTTCTTGTGGTGGCTTGTGTGTCTTATAGTCCTCTGGCGCCGTACTCTGCGTATAGTGTGCTCCTGCCTTTGATGTTGGTGATTGGGGCAACCATTGTTAAGGAAGCCATTGAAGATTGGAGGCGTAGGAAGCAGGTACAGCTTGATCCGAGTAATGAATTGTGATCTACCAAAATATTTTCAGGATATAGAGGCCAATAATAGGAAGGTTGAAGTCTATGATAGAAATCATGGATTCCAAATTGCGAGATGGAAGAAG...

CDS

2 records

下载 CDS FASTA

LOC130989375
ATGGCTAGTCCTAGGAAGAAAGTGATTCGATTTAGTAGGTTGTATTCGTTTTCTTGTTTTAGATCATCTTTTGGGGATGAACATAGTCAAATTGGGCTGAAGGGTTACTCAAGAGTGGTGTATTGTAATGACCCTGATAATCCAGAGCAGATTCTGCCTAGGTACCCGAGTAACTATGTCTCGACTACCAAGTACACCGCGATTAATTTCATTCCAAAGTCGTTGTTTGAGCAGTTTAGGAGGGTTGCCAACATATACTT...

LOC130989375
ATGAATTGTGATCTACCAAAATATTTTCAGGATATAGAGGCCAATAATAGGAAGGTTGAAGTCTATGATAGAAATCATGGATTCCAAATTGCGAGATGGAAGAAGTTAAGAGTCGGTGATCTTGTAAAAGTTCACAAGGATGAACATTTTCCTGCGGATATGCTGCTTCTCTCTTCGAGTTACGAGGATGGGATTTGTTATGTTGAAACTACAAATTTAGACGGGGAGACTAATCTAAAGGTGAAGCACGCTTTGGATGT...

Protein

2 records

下载 Protein FASTA

XP_057769318.1
MASPRKKVIRFSRLYSFSCFRSSFGDEHSQIGLKGYSRVVYCNDPDNPEQILPRYPSNYVSTTKYTAINFIPKSLFEQFRRVANIYFLVVACVSYSPLAPYSAYSVLLPLMLVIGATIVKEAIEDWRRRKQDIEANNRKVEVYDRNHGFQIARWKKLRVGDLVKVHKDEHFPADMLLLSSSYEDGICYVETTNLDGETNLKVKHALDVTSNMHEDDSFKHFKAVIKCEDPNEDLYSFVGTFYHDGQQYPVSLQQFLLRDS...

XP_057769319.1
MNCDLPKYFQDIEANNRKVEVYDRNHGFQIARWKKLRVGDLVKVHKDEHFPADMLLLSSSYEDGICYVETTNLDGETNLKVKHALDVTSNMHEDDSFKHFKAVIKCEDPNEDLYSFVGTFYHDGQQYPVSLQQFLLRDSKLRNTEYVYGVVVFTDHDTKVMQNAIEPPSKRSKIERKMDKIVYVLFSLLVLVSLIGSFFFGIMTENDIDDDGELRRWYLRPDQTTAFYDPNRSALAAFLHFLTALMLYGYLIPISLYVSI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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