当前解析结果
SmilChr06G002661| 统一新 Gene ID | SmilChr06G002661 |
|---|---|
| 名称 | SmilChr06G002661 |
| 描述 | protein KINESIN LIGHT CHAIN-RELATED 2-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 38448820 - 38452861 / - |
| NCBI Gene ID | LOC130989381 |
|---|---|
| GeneID | 130989381 |
| locus_tag | - |
| NCBI Name | LOC130989381 |
| 原始查询 | LOC130989381 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein KINESIN LIGHT CHAIN-RELATED 2-like |
| 产物 | protein KINESIN LIGHT CHAIN-RELATED 2-like |
| Arabidopsis | AT3G27960 (KLCR2)Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:822420] identity=58.1; qcov=0.95; evalue=0; confidence=high |
| Rice | Os02g0708400 (49D11.11)- identity=56.1; qcov=0.952; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF13181 (TPR_8); PF13374 (TPR_10); PF13424 (TPR_12) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989381 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057769327.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057769327.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057769327.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057769327.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057769327.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:38450357 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B10 |
Chr6:38450397 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr6:38450689 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C59 |
Chr6:38450902 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A7,C34,C74,D3 |
Chr6:38450944 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B34,B71,D5 |
Chr6:38450972 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | C55 |
Chr6:38450972 |
CT |
C |
1bp_deletion | CDS_variant | 1 | C55 |
Chr6:38451063 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B131,B78,B82,C60 |
Chr6:38451070 |
AT |
A |
1bp_deletion | frameshift_variant | 3 | B34,B71,D5 |
Chr6:38451070 |
AT |
A |
1bp_deletion | CDS_variant | 3 | B34,B71,D5 |
Chr6:38451178 |
G |
GT |
1bp_insertion | frameshift_variant | 1 | C74 |
Chr6:38451178 |
G |
GT |
1bp_insertion | CDS_variant | 1 | C74 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057769327.1PF13374
TPR_10 283-311 aa
PF13424
TPR_12 447-522 aa
PF13181
TPR_8 492-522 aa
PF13424
TPR_12 618-690 aa
PF13374
TPR_10 658-699 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769327.1 |
Pfam | PF13374 |
TPR_10 | Repeat | 283 | 311 | 1.5e-26 | 92.2 | Tetratricopeptide repeat |
XP_057769327.1 |
Pfam | PF13424 |
TPR_12 | Repeat | 447 | 522 | 6.8e-43 | 145.5 | Tetratricopeptide repeat |
XP_057769327.1 |
Pfam | PF13181 |
TPR_8 | Repeat | 492 | 522 | 2.3e-17 | 62.3 | Tetratricopeptide repeat |
XP_057769327.1 |
Pfam | PF13424 |
TPR_12 | Repeat | 618 | 690 | 6.8e-43 | 145.5 | Tetratricopeptide repeat |
XP_057769327.1 |
Pfam | PF13374 |
TPR_10 | Repeat | 658 | 699 | 1.5e-26 | 92.2 | Tetratricopeptide repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。