当前解析结果
SmilChr06G002766| 统一新 Gene ID | SmilChr06G002766 |
|---|---|
| 名称 | SmilChr06G002766 |
| 描述 | alpha-mannosidase 2 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 40261066 - 40266694 / - |
| NCBI Gene ID | LOC130989517 |
|---|---|
| GeneID | 130989517 |
| locus_tag | - |
| NCBI Name | LOC130989517 |
| 原始查询 | LOC130989517 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | alpha-mannosidase 2 |
| 产物 | alpha-mannosidase 2 |
| Arabidopsis | AT5G14950 (GMII)golgi alpha-mannosidase II [Source:NCBI gene (formerly Entrezgene);Acc:831347] identity=71; qcov=0.997; evalue=0; confidence=high |
| Rice | Os06g0245700- identity=67; qcov=0.791; evalue=0; confidence=high |
| GO | GO:0000139 (Golgi membrane); GO:0004559 (alpha-mannosidase activity); GO:0006013 (mannose metabolic process); GO:0006491 (N-glycan processing); GO:0006517 (protein deglycosylation); GO:0030246 (carbohydrate binding) |
| KEGG | smil00510 (N-Glycan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00513 (Various types of N-glycan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01074 (Glyco_hydro_38N); PF07748 (Glyco_hydro_38C); PF09261 (Alpha-mann_mid) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989517 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057769468.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057769468.1 |
| 3 | Golgi stack | 高尔基堆 | 0.20000 | XP_057769468.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057769468.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057769468.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:40261966 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B6 |
Chr6:40262401 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
Chr6:40262746 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C68 |
Chr6:40262944 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A23,B107,C12,C84 |
Chr6:40263243 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:40263264 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr6:40263520 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A20,B124,B51,C65 |
Chr6:40263830 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A18,B50,B62,B72,C43 |
Chr6:40263855 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B137 |
Chr6:40264070 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr6:40264218 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A20,B124,B51,C40,C65 |
Chr6:40266432 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B97 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057769468.1PF01074
Glyco_hydro_38N 144-486 aa
PF09261
Alpha-mann_mid 491-593 aa
PF07748
Glyco_hydro_38C 749-958 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769468.1 |
Pfam | PF01074 |
Glyco_hydro_38N | Domain | 144 | 486 | 2.5e-88 | 296.8 | Glycosyl hydrolases family 38 N-terminal domain |
XP_057769468.1 |
Pfam | PF09261 |
Alpha-mann_mid | Domain | 491 | 593 | 3.7e-23 | 82.1 | Alpha mannosidase middle domain |
XP_057769468.1 |
Pfam | PF07748 |
Glyco_hydro_38C | Domain | 749 | 958 | 1.1e-30 | 108.2 | Glycosyl hydrolases family 38 C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。