Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G002768`

染色体: Chr06 坐标: 40278448-40281609 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G002768`
名称	SmilChr06G002768
描述	E2F transcription factor-like E2FE
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	40278448 - 40281609 / `+`

ID 对照

NCBI Gene ID	`LOC130989519`
GeneID	`130989519`
locus_tag	`-`
NCBI Name	`LOC130989519`
原始查询	`LOC130989519`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	E2F transcription factor-like E2FE
产物	E2F transcription factor-like E2FE
Arabidopsis	`AT3G48160` (DEL1) DP-E2F-like 1 [Source:NCBI gene (formerly Entrezgene);Acc:823971] identity=44.2; qcov=1.1; evalue=5.01e-95; confidence=medium
Rice	`Os06g0245900` (Orysa) - identity=45.7; qcov=1.07; evalue=2.96e-93; confidence=high
GO	GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0006357 (regulation of transcription by RNA polymerase II); GO:0090575 (RNA polymerase II transcription regulator complex)
KEGG	-
Pfam	PF02319 (WHD_E2F_TDP)
InterPro	-
eggNOG	-
NR	GeneID:130989519

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057769470.1`
2	Chromosome	染色体	0.00000	`XP_057769470.1`
3	Centromere	着丝粒	0.00000	`XP_057769470.1`
4	Chromatin	染色质	0.00000	`XP_057769470.1`
5	Telomere	端粒	0.00000	`XP_057769470.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:40278982`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr6:40279007`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B89
`Chr6:40279007`	`TG`	`T`	1bp_deletion	CDS_variant	1	B89
`Chr6:40279037`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C3
`Chr6:40279179`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C51,C74
`Chr6:40280973`	`TA`	`T`	1bp_deletion	frameshift_variant	2	B65,C49
`Chr6:40280973`	`TA`	`T`	1bp_deletion	CDS_variant	2	B65,C49

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769470.1

337 aa

168

337

WHD_E2F_TDP

PF02319 WHD_E2F_TDP 16-80 aa PF02319 WHD_E2F_TDP 137-215 aa

XP_057769471.1

336 aa

168

336

WHD_E2F_TDP

PF02319 WHD_E2F_TDP 16-80 aa PF02319 WHD_E2F_TDP 136-214 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769470.1`	Pfam	`PF02319`	WHD_E2F_TDP	Domain	16	80	7e-42	141.7	E2F/DP family winged-helix DNA-binding domain
`XP_057769470.1`	Pfam	`PF02319`	WHD_E2F_TDP	Domain	137	215	7e-42	141.7	E2F/DP family winged-helix DNA-binding domain
`XP_057769471.1`	Pfam	`PF02319`	WHD_E2F_TDP	Domain	16	80	6.9e-42	141.7	E2F/DP family winged-helix DNA-binding domain
`XP_057769471.1`	Pfam	`PF02319`	WHD_E2F_TDP	Domain	136	214	6.9e-42	141.7	E2F/DP family winged-helix DNA-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057913488.1
AATTAAATATATTTGTTGTACTCAAAATAAAAAATGAGCTTATTCTAATGTCTCAAAATAAAAAATGAGTCCATTCTAGTGGATCTAAAGGAATACATATGTGCGCTTTCTTACTCAAAAGCTAAAATTTATGAGGTATAACAACAAGGACGACCAACTTTCAACATTAAATAATCCATTTGAATAATCAGTACATAACTCCCTTTTTAACAAGAAATAAAATAAAATTGTGGTATATATTGTGCTAAAATAAAATTTAT...

XM_057913487.1
GTACTCAAAATAAAAAATGAGCTTATTCTAATGTCTCAAAATAAAAAATGAGTCCATTCTAGTGGATCTAAAGGAATACATATGTGCGCTTTCTTACTCAAAAGCTAAAATTTATGAGGTATAACAACAAGGACGACCAACTTTCAACATTAAATAATCCATTTGAATAATCAGTACATAACTCCCTTTTTAACAAGAAATAAAATAAAATTGTGGTATATATTGTGCTAAAATAAAATTTATCCGAAATGAAAATCATA...

CDS

2 records

下载 CDS FASTA

LOC130989519
ATGGCGTCTCGTGATTCTCGTACAAAAGATGCATTTTACTGCCGCAAGGAGAAGTCTCTCGGTCTCCTATGCACCAATTTCCTGAGGCTGTACGATCGCGAAGGCGTGGACTCAATCGGATTGGACGCTGCTGCTCTTCAGCTAGGTGTTGAACGGAGAAGAATATACGACATTGTGAATATTTTGGAAGGCATTGGGGTTTTACAGAAGAAAGAGAAGAATCAATACACTTGGAAAGGTTTTGCTGCCATTTCTGGGGC...

Protein

2 records

下载 Protein FASTA

XP_057769470.1
MASRDSRTKDAFYCRKEKSLGLLCTNFLRLYDREGVDSIGLDAAALQLGVERRRIYDIVNILEGIGVLQKKEKNQYTWKGFAAISGALEVLKEQGEKEEFHTYITNVSNEKERSLLSDSKTECPDKCSKSDKGEHRREKSLGLLTQNFVKLFLCSEVEIISLDGAALALLGDSHDRTAMRTKVRRLYDIANVFSSMGLIEKVRDPESGKPAFRWTSVGRSRNRSSIASDGKNCKRRAFGDDITNTSVKKCKTIALTEQHQ...

XP_057769471.1
MASRDSRTKDAFYCRKEKSLGLLCTNFLRLYDREGVDSIGLDAAALQLGVERRRIYDIVNILEGIGVLQKKEKNQYTWKGFAAISGALEVLKEQGEKEEFHTYITNVSNEKERSLLSDSKTECPDKCSKSDKEHRREKSLGLLTQNFVKLFLCSEVEIISLDGAALALLGDSHDRTAMRTKVRRLYDIANVFSSMGLIEKVRDPESGKPAFRWTSVGRSRNRSSIASDGKNCKRRAFGDDITNTSVKKCKTIALTEQHQK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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