当前解析结果
SmilChr06G002771| 统一新 Gene ID | SmilChr06G002771 |
|---|---|
| 名称 | SmilChr06G002771 |
| 描述 | uncharacterized SmilChr06G002771 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 40303055 - 40306043 / + |
| NCBI Gene ID | LOC130989523 |
|---|---|
| GeneID | 130989523 |
| locus_tag | - |
| NCBI Name | LOC130989523 |
| 原始查询 | LOC130989523 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | seed maturation-like protein [Source:NCBI gene (formerly Entrezgene);Acc:831349]; symbol=AT5G14970; hit=AT5G14970; species=arabidopsis; confidence=high |
| 产物 | seed maturation-like protein [Source:NCBI gene (formerly Entrezgene);Acc:831349]; symbol=AT5G14970; hit=AT5G14970; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G14970 (AT5G14970)seed maturation-like protein [Source:NCBI gene (formerly Entrezgene);Acc:831349] identity=55.3; qcov=1.01; evalue=6.29e-133; confidence=high |
| Rice | Os12g0581700- identity=37.3; qcov=0.858; evalue=2.91e-45; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF05542 (DUF760) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989523 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057769475.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 0.60000 | XP_057769475.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057769475.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057769475.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057769475.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:40303244 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B96 |
Chr6:40303347 |
CCG |
C |
2bp_deletion | frameshift_variant | 58 | A13,A16,A2,A4,B107,B11,B111,B113,B115,B120,B124,B13,B134,B138,B14,B23,B24,B3,B34,B41,B45,B46,B47,B48,B50,B51,B52,B53,B55,B59,B61,B62,B64,B9,C1,C24,C29,C45,C47,C53,C59,C60,C63,C65,C67,C69,C71,C72,C73,C78,C80,C85,C86,C9,D4,D6,D7,D9 |
Chr6:40303362 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B130,B19,C18,C56 |
Chr6:40303363 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C12,D6 |
Chr6:40303413 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C24,C71 |
Chr6:40303440 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr6:40303455 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C24,C71 |
Chr6:40303488 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C24,C71 |
Chr6:40303503 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B113,B137,B56,B96,C56 |
Chr6:40303537 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B16 |
Chr6:40303580 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C86,D7 |
Chr6:40303594 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B100,B24,C41,C87 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057769475.1PF05542
DUF760 83-161 aa
PF05542
DUF760 258-362 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769475.1 |
Pfam | PF05542 |
DUF760 | Family | 83 | 161 | 1.1e-45 | 154.6 | Protein of unknown function (DUF760) |
XP_057769475.1 |
Pfam | PF05542 |
DUF760 | Family | 258 | 362 | 1.1e-45 | 154.6 | Protein of unknown function (DUF760) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。