Red Sage Omics 丹参基因组信息平台
首页 基因查询 ID 对照表 功能注释 结构域预测 Pfam 基因组工具 蛋白互作 亚细胞定位 表达量 共表达 同源/共线性 GO/KEGG 注释 TF 结合位点 TF 靶基因 EMS 突变 JBrowse BLAST 下载 关于 帮助
数据资源
ID 对照表 功能注释 功能检索 次生代谢专题 文献证据 结构域预测 Pfam 同源/共线性
分析工具
基因组工具 引物设计 同源重组引物设计 核酸翻译 BLAST 蛋白互作 亚细胞定位 共表达 GO/KEGG 注释 功能检索
调控/突变
TF 结合位点 TF 靶基因 EMS 突变
帮助
关于 帮助 资源与版本
中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G002772

染色体: Chr06 坐标: 40307238-40319160 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G002772
名称SmilChr06G002772
描述paired amphipathic helix protein Sin3-like 2
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向40307238 - 40319160 / -

ID 对照

NCBI Gene IDLOC130989524
GeneID130989524
locus_tag-
NCBI NameLOC130989524
原始查询LOC130989524

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述paired amphipathic helix protein Sin3-like 2
产物paired amphipathic helix protein Sin3-like 2
ArabidopsisAT5G15020 (SNL2)
SIN3-like 2 [Source:NCBI gene (formerly Entrezgene);Acc:831354]
identity=54.4; qcov=1.02; evalue=0; confidence=high
RiceOs01g0109700
-
identity=52.4; qcov=0.983; evalue=0; confidence=high
GOGO:0000118 (histone deacetylase complex); GO:0000122 (negative regulation of transcription by RNA polymerase II); GO:0000785 (chromatin); GO:0003714 (transcription corepressor activity); GO:0016575 (GO:0016575)
KEGG-
PfamPF02671 (PAH); PF08295 (Sin3_corepress); PF16879 (Sin3a_C)
InterPro-
eggNOG-
NRGeneID:130989524

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057769476.1
2 Chromosome 染色体 0.00000 XP_057769476.1
3 Centromere 着丝粒 0.00000 XP_057769476.1
4 Chromatin 染色质 0.00000 XP_057769476.1
5 Telomere 端粒 0.00000 XP_057769476.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr6:40312017 G A EMS_canonical_SNV CDS_variant 4 A7,B42,B43,C80
Chr6:40312575 C T EMS_canonical_SNV CDS_variant 1 B13
Chr6:40312707 C T EMS_canonical_SNV CDS_variant 1 A21
Chr6:40313764 G A EMS_canonical_SNV CDS_variant 1 C10
Chr6:40313788 C T EMS_canonical_SNV CDS_variant 1 D10
Chr6:40315278 G A EMS_canonical_SNV CDS_variant 5 B114,B12,C18,C37,C86
Chr6:40316304 G A EMS_canonical_SNV CDS_variant 5 B12,B79,C18,C37,C86
Chr6:40317103 G A EMS_canonical_SNV CDS_variant 1 C17
Chr6:40317111 C T EMS_canonical_SNV CDS_variant 4 A7,B42,B43,C80
Chr6:40317126 G A EMS_canonical_SNV CDS_variant 5 A20,B124,B51,C40,C65
Chr6:40318082 G A EMS_canonical_SNV CDS_variant 5 A21,B2,B28,B82,C87

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769476.1
1394 aa
N
1
697
1394
PAH
PAH
PAH
Sin3_corepress
Sin3a_C
C
PF02671 PAH 109-153 aa PF02671 PAH 194-238 aa PF02671 PAH 398-441 aa PF08295 Sin3_corepress 513-604 aa PF16879 Sin3a_C 1113-1360 aa
XP_057769477.1
1394 aa
N
1
697
1394
PAH
PAH
PAH
Sin3_corepress
Sin3a_C
C
PF02671 PAH 109-153 aa PF02671 PAH 194-238 aa PF02671 PAH 398-441 aa PF08295 Sin3_corepress 513-604 aa PF16879 Sin3a_C 1113-1360 aa
XP_057769478.1
1393 aa
N
1
696
1393
PAH
PAH
PAH
Sin3_corepress
Sin3a_C
C
PF02671 PAH 109-153 aa PF02671 PAH 194-238 aa PF02671 PAH 398-441 aa PF08295 Sin3_corepress 512-603 aa PF16879 Sin3a_C 1112-1359 aa
XP_057769479.1
1393 aa
N
1
696
1393
PAH
PAH
PAH
Sin3_corepress
Sin3a_C
C
PF02671 PAH 109-153 aa PF02671 PAH 194-238 aa PF02671 PAH 398-441 aa PF08295 Sin3_corepress 512-603 aa PF16879 Sin3a_C 1112-1359 aa
XP_057769480.1
1393 aa
N
1
696
1393
PAH
PAH
PAH
Sin3_corepress
Sin3a_C
C
PF02671 PAH 109-153 aa PF02671 PAH 194-238 aa PF02671 PAH 397-440 aa PF08295 Sin3_corepress 512-603 aa PF16879 Sin3a_C 1112-1359 aa
XP_057769481.1
1392 aa
N
1
696
1392
PAH
PAH
PAH
Sin3_corepress
Sin3a_C
C
PF02671 PAH 109-153 aa PF02671 PAH 194-238 aa PF02671 PAH 398-441 aa PF08295 Sin3_corepress 511-602 aa PF16879 Sin3a_C 1111-1358 aa
XP_057769482.1
1392 aa
N
1
696
1392
PAH
PAH
PAH
Sin3_corepress
Sin3a_C
C
PF02671 PAH 109-153 aa PF02671 PAH 194-238 aa PF02671 PAH 397-440 aa PF08295 Sin3_corepress 511-602 aa PF16879 Sin3a_C 1111-1358 aa
XP_057769483.1
1391 aa
N
1
696
1391
PAH
PAH
PAH
Sin3_corepress
Sin3a_C
C
PF02671 PAH 109-153 aa PF02671 PAH 194-238 aa PF02671 PAH 397-440 aa PF08295 Sin3_corepress 510-601 aa PF16879 Sin3a_C 1110-1357 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057769476.1 Pfam PF02671 PAH Repeat 109 153 1.5e-55 185.4 Paired amphipathic helix repeat
XP_057769476.1 Pfam PF02671 PAH Repeat 194 238 1.5e-55 185.4 Paired amphipathic helix repeat
XP_057769476.1 Pfam PF02671 PAH Repeat 398 441 1.5e-55 185.4 Paired amphipathic helix repeat
XP_057769476.1 Pfam PF08295 Sin3_corepress Domain 513 604 9.9e-35 119.2 Sin3 family co-repressor
XP_057769476.1 Pfam PF16879 Sin3a_C Family 1113 1360 3.6e-44 152.1 C-terminal domain of Sin3a protein
XP_057769477.1 Pfam PF02671 PAH Repeat 109 153 1.5e-55 185.4 Paired amphipathic helix repeat
XP_057769477.1 Pfam PF02671 PAH Repeat 194 238 1.5e-55 185.4 Paired amphipathic helix repeat
XP_057769477.1 Pfam PF02671 PAH Repeat 398 441 1.5e-55 185.4 Paired amphipathic helix repeat
XP_057769477.1 Pfam PF08295 Sin3_corepress Domain 513 604 9.9e-35 119.2 Sin3 family co-repressor
XP_057769477.1 Pfam PF16879 Sin3a_C Family 1113 1360 3.6e-44 152.1 C-terminal domain of Sin3a protein
XP_057769478.1 Pfam PF02671 PAH Repeat 109 153 1.5e-55 185.4 Paired amphipathic helix repeat
XP_057769478.1 Pfam PF02671 PAH Repeat 194 238 1.5e-55 185.4 Paired amphipathic helix repeat
XP_057769478.1 Pfam PF02671 PAH Repeat 398 441 1.5e-55 185.4 Paired amphipathic helix repeat
XP_057769478.1 Pfam PF08295 Sin3_corepress Domain 512 603 9.9e-35 119.2 Sin3 family co-repressor
XP_057769478.1 Pfam PF16879 Sin3a_C Family 1112 1359 3.6e-44 152.1 C-terminal domain of Sin3a protein
XP_057769479.1 Pfam PF02671 PAH Repeat 109 153 1.5e-55 185.4 Paired amphipathic helix repeat
XP_057769479.1 Pfam PF02671 PAH Repeat 194 238 1.5e-55 185.4 Paired amphipathic helix repeat
XP_057769479.1 Pfam PF02671 PAH Repeat 398 441 1.5e-55 185.4 Paired amphipathic helix repeat
XP_057769479.1 Pfam PF08295 Sin3_corepress Domain 512 603 9.9e-35 119.2 Sin3 family co-repressor
XP_057769479.1 Pfam PF16879 Sin3a_C Family 1112 1359 3.6e-44 152.1 C-terminal domain of Sin3a protein
XP_057769480.1 Pfam PF02671 PAH Repeat 109 153 1.5e-55 185.4 Paired amphipathic helix repeat
XP_057769480.1 Pfam PF02671 PAH Repeat 194 238 1.5e-55 185.4 Paired amphipathic helix repeat
XP_057769480.1 Pfam PF02671 PAH Repeat 397 440 1.5e-55 185.4 Paired amphipathic helix repeat
XP_057769480.1 Pfam PF08295 Sin3_corepress Domain 512 603 9.9e-35 119.2 Sin3 family co-repressor
XP_057769480.1 Pfam PF16879 Sin3a_C Family 1112 1359 3.6e-44 152.1 C-terminal domain of Sin3a protein
XP_057769481.1 Pfam PF02671 PAH Repeat 109 153 1.5e-55 185.4 Paired amphipathic helix repeat
XP_057769481.1 Pfam PF02671 PAH Repeat 194 238 1.5e-55 185.4 Paired amphipathic helix repeat
XP_057769481.1 Pfam PF02671 PAH Repeat 398 441 1.5e-55 185.4 Paired amphipathic helix repeat
XP_057769481.1 Pfam PF08295 Sin3_corepress Domain 511 602 9.8e-35 119.2 Sin3 family co-repressor
XP_057769481.1 Pfam PF16879 Sin3a_C Family 1111 1358 3.6e-44 152.1 C-terminal domain of Sin3a protein
XP_057769482.1 Pfam PF02671 PAH Repeat 109 153 1.5e-55 185.4 Paired amphipathic helix repeat
XP_057769482.1 Pfam PF02671 PAH Repeat 194 238 1.5e-55 185.4 Paired amphipathic helix repeat
XP_057769482.1 Pfam PF02671 PAH Repeat 397 440 1.5e-55 185.4 Paired amphipathic helix repeat
XP_057769482.1 Pfam PF08295 Sin3_corepress Domain 511 602 9.8e-35 119.2 Sin3 family co-repressor
XP_057769482.1 Pfam PF16879 Sin3a_C Family 1111 1358 3.5e-44 152.1 C-terminal domain of Sin3a protein
XP_057769483.1 Pfam PF02671 PAH Repeat 109 153 1.5e-55 185.4 Paired amphipathic helix repeat
XP_057769483.1 Pfam PF02671 PAH Repeat 194 238 1.5e-55 185.4 Paired amphipathic helix repeat
XP_057769483.1 Pfam PF02671 PAH Repeat 397 440 1.5e-55 185.4 Paired amphipathic helix repeat
XP_057769483.1 Pfam PF08295 Sin3_corepress Domain 510 601 9.8e-35 119.2 Sin3 family co-repressor
XP_057769483.1 Pfam PF16879 Sin3a_C Family 1110 1357 3.6e-44 152.1 C-terminal domain of Sin3a protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA
XM_057913500.1
TAAGAGTAAGATTTCCTCTTTCACATAAAACTTCACTAAAAAAATTTTCTCTCCAAAATTTTCACTTAGTCGTTTTGGACGTTCTCGCAACTTCATTCTTGTTGCAGAGAGAAAAATTTGAAGCTGTAGAAAAGAATTTATTGAAATTACAAACTATAGTTTTGATCGGAACAAATTTCTACTTAATATTGGATTAGATCTGTTTTTCATCTTTTCCCTTTGTTGGAGGGAGGAGACTTGACAGGGATGAAGCGATTGAG...
XM_057913499.1
TAAGAGTAAGATTTCCTCTTTCACATAAAACTTCACTAAAAAAATTTTCTCTCCAAAATTTTCACTTAGTCGTTTTGGACGTTCTCGCAACTTCATTCTTGTTGCAGAGAGAAAAATTTGAAGCTGTAGAAAAGAATTTATTGAAATTACAAACTATAGTTTTGATCGGAACAAATTTCTACTTAATATTGGATTAGATCTGTTTTTCATCTTTTCCCTTTGTTGGAGGGAGGAGACTTGACAGGGATGAAGCGATTGAG...

CDS

8 records

下载 CDS FASTA
LOC130989524
ATGAAGCGATTGAGGGATGAGGTGTTTATGAACCCTCAGTTTAAGCGGCCATTTGGTTCGTCGTCGTCTCGCGGGGAATCGTACGGACCAGCACAAGCTCCCAGCGGCGGTGGCACTGCTGGTGGCGGCGGCGGCGGCGGCGGGACTAGTGGTGGTGGTGGTGGAGGAGGAGGAGGAGGAGGTGGTGGTGGCAGTAGTAATGGTGGTGGGAATGGGGTTAGTACCAGTGGTGCCGGTGTCGCTGCTGGTAGTACACAAAA...
LOC130989524
ATGAAGCGATTGAGGGATGAGGTGTTTATGAACCCTCAGTTTAAGCGGCCATTTGGTTCGTCGTCGTCTCGCGGGGAATCGTACGGACCAGCACAAGCTCCCAGCGGCGGTGGCACTGCTGGTGGCGGCGGCGGCGGCGGCGGGACTAGTGGTGGTGGTGGTGGAGGAGGAGGAGGAGGAGGTGGTGGTGGCAGTAGTAATGGTGGTGGGAATGGGGTTAGTACCAGTGGTGCCGGTGTCGCTGCTGGTAGTACACAAAA...

Protein

8 records

下载 Protein FASTA
XP_057769476.1
MKRLRDEVFMNPQFKRPFGSSSSRGESYGPAQAPSGGGTAGGGGGGGGTSGGGGGGGGGGGGGGSSNGGGNGVSTSGAGVAAGSTQKLTTNDALSYLKQVKDMFQDQREKYDRFLDVMKDFKAQRIDTAGVIARVKELFKGHPNLILGFNTFLPKGYEITLTDEEEAPPKRTVEFEEAISFVNKIKKRFQNDDHVYKSFLDILNMYRKEHKGITEVYQEVAALFDDHADLLEEFTRFLPDTSATAPAPHASFCRHPFNRY...
XP_057769477.1
MKRLRDEVFMNPQFKRPFGSSSSRGESYGPAQAPSGGGTAGGGGGGGGTSGGGGGGGGGGGGGGSSNGGGNGVSTSGAGVAAGSTQKLTTNDALSYLKQVKDMFQDQREKYDRFLDVMKDFKAQRIDTAGVIARVKELFKGHPNLILGFNTFLPKGYEITLTDEEEAPPKRTVEFEEAISFVNKIKKRFQNDDHVYKSFLDILNMYRKEHKGITEVYQEVAALFDDHADLLEEFTRFLPDTSATAPAPHASFCRHPFNRY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器