当前解析结果
SmilChr06G002774| 统一新 Gene ID | SmilChr06G002774 |
|---|---|
| 名称 | SmilChr06G002774 |
| 描述 | ABC transporter B family member 15-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 40348053 - 40355981 / - |
| NCBI Gene ID | LOC130989526 |
|---|---|
| GeneID | 130989526 |
| locus_tag | - |
| NCBI Name | LOC130989526 |
| 原始查询 | LOC130989526 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ABC transporter B family member 15-like |
| 产物 | ABC transporter B family member 15-like |
| Arabidopsis | AT3G28345 (ABCB15)ABC transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:822463] identity=71.2; qcov=0.993; evalue=0; confidence=high |
| Rice | Os02g0190300 (OsABCB9)- identity=69.5; qcov=0.977; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0055085 (transmembrane transport); GO:0140359 (ABC-type transporter activity) |
| KEGG | smil02010 (ABC transporters - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00005 (ABC_tran); PF00664 (ABC_membrane) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989526 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057769484.1 |
| 2 | Vacuole | 液泡 | 0.20000 | XP_057769484.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.20000 | XP_057769484.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057769484.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057769484.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:40348365 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | C17,C34,C51,C62,C74 |
Chr6:40348392 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | C17,C34,C51,C62,C74 |
Chr6:40348503 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A20,B124,C40,C65 |
Chr6:40348506 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | C17,C34,C51,C62,C74 |
Chr6:40348674 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A20,B124,B51,C40,C65 |
Chr6:40348704 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A20,B51,C40,C65 |
Chr6:40348988 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B94 |
Chr6:40348988 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B94 |
Chr6:40348992 |
A |
AG |
1bp_insertion | frameshift_variant | 1 | B94 |
Chr6:40348992 |
A |
AG |
1bp_insertion | CDS_variant | 1 | B94 |
Chr6:40349045 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A15,A23,C83 |
Chr6:40349512 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B79 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057769484.1PF00664
ABC_membrane 43-312 aa
PF00005
ABC_tran 388-536 aa
PF00664
ABC_membrane 686-954 aa
PF00005
ABC_tran 1026-1175 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769484.1 |
Pfam | PF00664 |
ABC_membrane | Family | 43 | 312 | 6.6e-97 | 325.2 | ABC transporter transmembrane region |
XP_057769484.1 |
Pfam | PF00005 |
ABC_tran | Domain | 388 | 536 | 3.4e-67 | 226.0 | ABC transporter |
XP_057769484.1 |
Pfam | PF00664 |
ABC_membrane | Family | 686 | 954 | 6.6e-97 | 325.2 | ABC transporter transmembrane region |
XP_057769484.1 |
Pfam | PF00005 |
ABC_tran | Domain | 1026 | 1175 | 3.4e-67 | 226.0 | ABC transporter |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。