Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003044`

染色体: Chr01 坐标: 49421625-49424905 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003044`
名称	SmilChr01G003044
描述	uncharacterized SmilChr01G003044
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	49421625 - 49424905 / `-`

ID 对照

NCBI Gene ID	`LOC130989533`
GeneID	`130989533`
locus_tag	`-`
NCBI Name	`LOC130989533`
原始查询	`LOC130989533`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	lipid-binding serum glycoprotein family protein [Source:NCBI gene (formerly Entrezgene);Acc:821571]; symbol=AT3G20270; hit=AT3G20270; species=arabidopsis; confidence=high
产物	lipid-binding serum glycoprotein family protein [Source:NCBI gene (formerly Entrezgene);Acc:821571]; symbol=AT3G20270; hit=AT3G20270; species=arabidopsis; confidence=high
Arabidopsis	`AT3G20270` (AT3G20270) lipid-binding serum glycoprotein family protein [Source:NCBI gene (formerly Entrezgene);Acc:821571] identity=55.2; qcov=0.975; evalue=3.3e-91; confidence=high
Rice	`Os09g0497600` (OsFbox493) - identity=55.6; qcov=0.305; evalue=1.33e-26; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF12937 (F-box-like)
InterPro	-
eggNOG	-
NR	GeneID:130989533

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.60000	`XP_057769492.1`
2	Nucleus	细胞核	0.40000	`XP_057769492.1`
3	Chloroplast	叶绿体	0.20000	`XP_057769492.1`
4	Chromosome	染色体	0.00000	`XP_057769492.1`
5	Centromere	着丝粒	0.00000	`XP_057769492.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:49421924`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B101,B104
`Chr1:49421986`	`G`	`GAT`	2bp_insertion	frameshift_variant	2	B34,C29
`Chr1:49421986`	`G`	`GAT`	2bp_insertion	CDS_variant	2	B34,C29
`Chr1:49423944`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr1:49424072`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A24,B113
`Chr1:49424074`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B36
`Chr1:49424093`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B36

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769492.1

236 aa

118

236

F-box-like

F-box

PF12937 F-box-like 17-58 aa PF00646 F-box 18-58 aa

XP_057769500.1

236 aa

118

236

F-box-like

F-box

PF12937 F-box-like 17-58 aa PF00646 F-box 18-58 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769492.1`	Pfam	`PF12937`	F-box-like	Domain	17	58	7e-08	32.8	F-box-like
`XP_057769492.1`	Pfam	`PF00646`	F-box	Domain	18	58	2.7e-08	34.1	F-box domain
`XP_057769500.1`	Pfam	`PF12937`	F-box-like	Domain	17	58	7e-08	32.8	F-box-like
`XP_057769500.1`	Pfam	`PF00646`	F-box	Domain	18	58	2.7e-08	34.1	F-box domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057913509.1
ATGATTCTCCATCTATATATTCGTTTTTTTATTTTTACTTTTTGATTTTTATCTCATCACACTCAAAAAAAAGAAAAAGAAAAAAAGGGAAAATAAATGGAGCGTGGGGTTTCTCGAAGAGCTGGTATTGTCACTGCCTCACCAGTTACGGCAGGCATTCGCTCTCTCTCTCTCTCTCTCGCTGTGTGCAGTGCAGCAGGCTCAGCTAGCATTGCATGCTGTGGTGAATGGCAGAAGAGAGCAACAAAGCCTTGTCACTT...

XM_057913517.1
TTGATTTTTATCTCATCACACTCAAAAAAAAGAAAAAGAAAAAAAGGGAAAATAAATGGAGCGTGGGGTTTCTCGAAGAGCTGGTATTGTCACTGCCTCACCAGTTACGGCAGGCATTCGCTCTCTCTCTCTCTCTCTCGCTGTGTGCAGTGCAGGCTCAGCTAGCATTGCATGCTGTGGTGAATGGCAGAAGAGAGCAACAAAGCCTTGTCACTTTCAGTTGATTGTCCTATTGCACGGCTTCCCGATCATCTGTTGAT...

CDS

2 records

下载 CDS FASTA

LOC130989533
ATGGCAGAAGAGAGCAACAAAGCCTTGTCACTTTCAGTTGATTGTCCTATTGCACGGCTTCCCGATCATCTGTTGATTGAGATCTTTATTCGTGTGCCCATAGTGGAGTGGGGACAGCTCTCATGTGTTAATAAATACTGGGCTGATTTGTTTAGGCAGGATTGCTTGTGGCACGCTGCTCTCGTCAGGTGTTTCCCTTTGGCTGGTCAAGGTGAAAGGTGGCCCGGTCCTATTCCTCGTGGGATGAGCAAGAGGAGGTT...

Protein

2 records

下载 Protein FASTA

XP_057769492.1
MAEESNKALSLSVDCPIARLPDHLLIEIFIRVPIVEWGQLSCVNKYWADLFRQDCLWHAALVRCFPLAGQGERWPGPIPRGMSKRRFIALYMSKCIFPLDDELSEIVGHSYLFLKEQLEISTLPPSPGILHGTVIDQFIACGKSRDRAHELASVIWLAVIDNLEDNHQTFLLLKRLALEGDVFLPYPYTRSLKVEWKIFDRLFTDFRDCLADADYYDLLACAKQKFQPIPATWLGY

XP_057769500.1
MAEESNKALSLSVDCPIARLPDHLLIEIFIRVPIVEWGQLSCVNKYWADLFRQDCLWHAALVRCFPLAGQGERWPGPIPRGMSKRRFIALYMSKCIFPLDDELSEIVGHSYLFLKEQLEISTLPPSPGILHGTVIDQFIACGKSRDRAHELASVIWLAVIDNLEDNHQTFLLLKRLALEGDVFLPYPYTRSLKVEWKIFDRLFTDFRDCLADADYYDLLACAKQKFQPIPATWLGY

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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