当前解析结果
SmilChr06G002808| 统一新 Gene ID | SmilChr06G002808 |
|---|---|
| 名称 | SmilChr06G002808 |
| 描述 | E3 ubiquitin-protein ligase MPSR1-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 40782714 - 40783768 / + |
| NCBI Gene ID | LOC130989551 |
|---|---|
| GeneID | 130989551 |
| locus_tag | - |
| NCBI Name | LOC130989551 |
| 原始查询 | LOC130989551 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | E3 ubiquitin-protein ligase MPSR1-like |
| 产物 | E3 ubiquitin-protein ligase MPSR1-like |
| Arabidopsis | AT1G26800 (AT1G26800)RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839223] identity=39.2; qcov=0.838; evalue=2.7e-31; confidence=medium |
| Rice | Os05g0488800 (OsSIRP1)- identity=46.8; qcov=0.461; evalue=4.79e-23; confidence=medium |
| GO | GO:0005654 (nucleoplasm); GO:0005737 (cytoplasm) |
| KEGG | - |
| Pfam | PF00097 (zf-C3HC4); PF12678 (zf-rbx1); PF13445 (zf-RING_UBOX); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF17123 (zf-RING_11) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989551 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057769507.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057769507.1 |
| 3 | Cytoplasm | 细胞质 | 0.80000 | XP_057769507.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057769507.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057769507.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:40783060 |
C |
CT |
1bp_insertion | frameshift_variant | 1 | B124 |
Chr6:40783060 |
C |
CT |
1bp_insertion | CDS_variant | 1 | B124 |
Chr6:40783069 |
C |
CG |
1bp_insertion | frameshift_variant | 24 | A13,A9,B111,B117,B121,B122,B123,B129,B137,B18,B21,B31,B5,B54,B59,B6,B85,B88,B9,C26,C50,C67,C84,C9 |
Chr6:40783142 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr6:40783189 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C4 |
Chr6:40783226 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr6:40783247 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr6:40783265 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A13 |
Chr6:40783303 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A1,B130,B30 |
Chr6:40783314 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C7 |
Chr6:40783421 |
T |
TA |
1bp_insertion | frameshift_variant | 2 | C11,C69 |
Chr6:40783421 |
T |
TA |
1bp_insertion | CDS_variant | 2 | C11,C69 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057769507.1PF12678
zf-rbx1 99-142 aa
PF17123
zf-RING_11 100-128 aa
PF13923
zf-C3HC4_2 100-141 aa
PF13639
zf-RING_2 100-142 aa
PF13445
zf-RING_UBOX 101-139 aa
PF00097
zf-C3HC4 101-141 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769507.1 |
Pfam | PF12678 |
zf-rbx1 | Domain | 99 | 142 | 2.9e-09 | 37.7 | RING-H2 zinc finger domain |
XP_057769507.1 |
Pfam | PF17123 |
zf-RING_11 | Domain | 100 | 128 | 6e-10 | 39.4 | RING-like zinc finger |
XP_057769507.1 |
Pfam | PF13923 |
zf-C3HC4_2 | Domain | 100 | 141 | 5.8e-10 | 39.5 | Zinc finger, C3HC4 type (RING finger) |
XP_057769507.1 |
Pfam | PF13639 |
zf-RING_2 | Domain | 100 | 142 | 7.7e-16 | 58.8 | Ring finger domain |
XP_057769507.1 |
Pfam | PF13445 |
zf-RING_UBOX | Domain | 101 | 139 | 8.9e-06 | 26.3 | RING-type zinc-finger |
XP_057769507.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 101 | 141 | 1.4e-08 | 35.2 | Zinc finger, C3HC4 type (RING finger) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。