当前解析结果
SmilChr06G002828| 统一新 Gene ID | SmilChr06G002828 |
|---|---|
| 名称 | SmilChr06G002828 |
| 描述 | uncharacterized SmilChr06G002828 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 41048896 - 41049241 / - |
| NCBI Gene ID | LOC130989573 |
|---|---|
| GeneID | 130989573 |
| locus_tag | - |
| NCBI Name | LOC130989573 |
| 原始查询 | LOC130989573 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:821581]; symbol=AT3G20362; hit=AT3G20362; species=arabidopsis; confidence=low |
| 产物 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:821581]; symbol=AT3G20362; hit=AT3G20362; species=arabidopsis; confidence=low |
| Arabidopsis | AT3G20362 (AT3G20362)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:821581] identity=80.6; qcov=1; evalue=7.43e-13; confidence=low |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989573 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 0.80000 | XP_057769528.1 |
| 2 | Secreted | 分泌到胞外 | 0.20000 | XP_057769528.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057769528.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057769528.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057769528.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:41048993 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | C5 |
Chr6:41048993 |
AC |
A |
1bp_deletion | CDS_variant | 1 | C5 |
Chr6:41048998 |
C |
T |
EMS_canonical_SNV | stop_gained | 22 | A13,A9,B111,B117,B122,B123,B129,B137,B21,B31,B5,B54,B59,B6,B85,B88,B9,C26,C50,C67,C84,C9 |
Chr6:41049002 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C5 |
Chr6:41049016 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
Chr6:41049048 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C33 |
Chr6:41049055 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A9,B25,C27,C56 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。