Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G002846

染色体: Chr06 坐标: 41228988-41231369 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G002846
名称SmilChr06G002846
描述uncharacterized protein At5g39570-like
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向41228988 - 41231369 / -

ID 对照

NCBI Gene IDLOC130989591
GeneID130989591
locus_tag-
NCBI NameLOC130989591
原始查询LOC130989591

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述P0479H10.4-1; symbol=P0479H10.4-1; hit=Os06g0232000; species=rice; confidence=medium
产物P0479H10.4-1; symbol=P0479H10.4-1; hit=Os06g0232000; species=rice; confidence=medium
ArabidopsisAT3G29075 (AT3G29075)
glycine-rich protein [Source:NCBI gene (formerly Entrezgene);Acc:822552]
identity=48.1; qcov=0.387; evalue=1.2e-24; confidence=low
RiceOs06g0232000 (P0479H10.4-1)
-
identity=37.1; qcov=1.2; evalue=3.6e-32; confidence=medium
GOGO:0070300 (phosphatidic acid binding)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130989591

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057769554.1
2 Nucleus 细胞核 0.80000 XP_057769554.1
3 Nucleoplasm 核质 0.40000 XP_057769554.1
4 Cytoplasmic granule 细胞质颗粒 0.20000 XP_057769554.1
5 Chromosome 染色体 0.00000 XP_057769554.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr6:41230307 C T EMS_canonical_SNV CDS_variant 1 C82
Chr6:41230486 C T EMS_canonical_SNV CDS_variant 2 A23,B15
Chr6:41230624 G A EMS_canonical_SNV CDS_variant 4 B119,B91,C60,C83
Chr6:41230692 C T EMS_canonical_SNV CDS_variant 1 B90
Chr6:41230700 G A EMS_canonical_SNV CDS_variant 1 B47
Chr6:41230874 G A EMS_canonical_SNV CDS_variant 1 C65
Chr6:41230951 G A EMS_canonical_SNV CDS_variant 2 B125,C44
Chr6:41231019 C T EMS_canonical_SNV CDS_variant 1 C51
Chr6:41231042 C T EMS_canonical_SNV CDS_variant 1 C1

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057913572.1
GGGATATTCTGCTGACACTCGTATCATTTGAAACTATATTTCCCCAATGGTCATGCGATAATGTATTCCTAATTTCCTCAGGCAAAAAAAAATTGAAAAAAAAGAAAATCATGCCGACGTCCCTCAATCATTACAAAAAACGAGATTAGATCCTTACAATCCGCGCGAACGCGTCGGCGACGCGTTTCCGAGCGCCACGTGTCCAATTACGGCAATAACTTCCCAGATCCAACTGTAAATCACGACAACCATAAATACCC...
XM_057913573.1
AAAAAAAATTGAAAAAAAAGAAAATCATGCCGACGTCCCTCAATCATTACAAAAAACGAGATTAGATCCTTACAATCCGCGCGAACGCGTCGGCGACGCGTTTCCGAGCGCCACGTGTCCAATTACGGCAATAACTTCCCAGATCCAACTGTAAATCACGACAACCATAAATACCCTCACAACTGAAGTCGACGATCCCATTTCTCACACAATCAATCTCAATCATGTCGTACTTCCCTAAAGGCCACCACGACTCCGGC...

CDS

3 records

下载 CDS FASTA
LOC130989591
ATGTCGTACTTCCCTAAAGGCCACCACGACTCCGGCGACGAGGTCGACGACTTCGACGACTACGATCCCACCCCCTACGGCGGCGGCTACAACATCGAATTAACCTACGGCCGCGCCCTGCCCCCCTCCGACGAGACCTGCTACCGCAACACCTCCTCCGCCTCCGACGACTTCGACTACGACCGCCCCCAATACACCTCCTCCGCCGAGCCCTCCGCCTACGGCCAAGACGCCCTCGACAACGAGTACAAGAGCTACGC...
LOC130989591
ATGTCGTACTTCCCTAAAGGCCACCACGACTCCGGCGACGAGGTCGACGACTTCGACGACTACGATCCCACCCCCTACGGCGGCGGCTACAACATCGAATTAACCTACGGCCGCGCCCTGCCCCCCTCCGACGAGACCTGCTACCGCAACACCTCCTCCGCCTCCGACGACTTCGACTACGACCGCCCCCAATACACCTCCTCCGCCGAGCCCTCCGCCTACGGCCAAGACGCCCTCGACAACGAGTACAAGAGCTACGC...

Protein

3 records

下载 Protein FASTA
XP_057769554.1
MSYFPKGHHDSGDEVDDFDDYDPTPYGGGYNIELTYGRALPPSDETCYRNTSSASDDFDYDRPQYTSSAEPSAYGQDALDNEYKSYARPKPRPGATRPGAGGYGVDSGHESGGRRPEHGSSGGGGGGYGRKPEYGEQGSEYGSGGGGYGRKPEYGEQESEYGSGGGGYGRKPEYGEQGSGGGGYGRKPEYGEQGSEYGSGGGGYGRKPEYEEQGSEYGSGRRPGYEQPASEYGSGGYGRRPEAESEYGSGQGRRPEREEY...
XP_057769555.1
MSYFPKGHHDSGDEVDDFDDYDPTPYGGGYNIELTYGRALPPSDETCYRNTSSASDDFDYDRPQYTSSAEPSAYGQDALDNEYKSYARPKPRPGATRPGAGGYGVDSGHESGGRRPEHGSSGGGGGGYGRKPEYGEQGSEYGSGGGGYGRKPEYGEQESEYGSGGGGYGRKPEYGEQGSGGGGYGRKPEYGEQGSEYGSGGGGYGRKPEYEEQGSEYGSGRRPGYEQPASEYGSGGYGRRPEAESEYGSGQGRRPEREEY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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