当前解析结果
SmilChr06G002853| 统一新 Gene ID | SmilChr06G002853 |
|---|---|
| 名称 | SmilChr06G002853 |
| 描述 | CSC1-like protein HYP1 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 41293565 - 41300630 / + |
| NCBI Gene ID | LOC130989598 |
|---|---|
| GeneID | 130989598 |
| locus_tag | - |
| NCBI Name | LOC130989598 |
| 原始查询 | LOC130989598 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | CSC1-like protein HYP1 |
| 产物 | CSC1-like protein HYP1 |
| Arabidopsis | AT3G01100 (HYP1)- identity=60.1; qcov=0.965; evalue=0; confidence=high |
| Rice | Os12g0582800 (OsOSCA2.4)- identity=55.4; qcov=0.998; evalue=0; confidence=high |
| GO | GO:0005227 (calcium-activated cation channel activity); GO:0005886 (plasma membrane) |
| KEGG | - |
| Pfam | PF02714 (RSN1_7TM); PF13967 (RSN1_TM); PF14703 (PHM7_cyt) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989598 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 0.80000 | XP_057769567.1 |
| 2 | Cell membrane | 细胞膜 | 0.80000 | XP_057769572.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.80000 | XP_057769567.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057769567.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057769567.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:41296496 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | B63,B66,C25 |
Chr6:41296496 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B63,B66,C25 |
Chr6:41296648 |
AAT |
A |
2bp_deletion | frameshift_variant | 110 | A1,A14,A19,A20,A21,A3,A5,A6,B1,B10,B101,B108,B109,B110,B112,B113,B117,B118,B12,B122,B124,B126,B128,B13,B132,B135,B136,B137,B138,B139,B14,B15,B18,B20,B22,B24,B25,B33,B35,B36,B38,B39,B5,B54,B57,B63,B64,B65,B67,B7,B70,B71,B72,B75,B76,B78,B80,B83,B84,B86,B9,B90,B91,B92,B93,B95,C15,C16,C18,C2,C20,C22,C24,C26,C27,C29,C37,C39,C40,C41,C44,C45,C5,C50,C52,C57,C58,C59,C6,C61,C62,C63,C64,C66,C7,C70,C71,C72,C75,C76,C77,C78,C83,C84,C85,C87,D11,D3,D4,D5 |
Chr6:41296656 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B3,B69,D11 |
Chr6:41296710 |
C |
T |
EMS_canonical_SNV | stop_gained | 6 | B100,B40,B97,C27,C38,C62 |
Chr6:41296721 |
T |
TAG |
2bp_insertion | frameshift_variant | 4 | B107,B44,B6,C63 |
Chr6:41296721 |
T |
TAG |
2bp_insertion | CDS_variant | 4 | B107,B44,B6,C63 |
Chr6:41296819 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr6:41296848 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C82,D7 |
Chr6:41297376 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B35,B40 |
Chr6:41297377 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
Chr6:41298068 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057769567.1PF13967
RSN1_TM 5-168 aa
PF14703
PHM7_cyt 189-344 aa
PF02714
RSN1_7TM 358-623 aa
XP_057769568.1PF13967
RSN1_TM 5-168 aa
PF14703
PHM7_cyt 189-344 aa
PF02714
RSN1_7TM 358-623 aa
XP_057769569.1PF13967
RSN1_TM 5-168 aa
PF14703
PHM7_cyt 189-344 aa
PF02714
RSN1_7TM 358-623 aa
XP_057769570.1PF13967
RSN1_TM 5-168 aa
PF14703
PHM7_cyt 189-344 aa
PF02714
RSN1_7TM 358-623 aa
XP_057769572.1PF13967
RSN1_TM 15-53 aa
PF14703
PHM7_cyt 74-229 aa
PF02714
RSN1_7TM 243-508 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769567.1 |
Pfam | PF13967 |
RSN1_TM | Family | 5 | 168 | 7.2e-38 | 130.4 | Late exocytosis, associated with Golgi transport |
XP_057769567.1 |
Pfam | PF14703 |
PHM7_cyt | Domain | 189 | 344 | 1.1e-37 | 130.6 | Cytosolic domain of 10TM putative phosphate transporter |
XP_057769567.1 |
Pfam | PF02714 |
RSN1_7TM | Family | 358 | 623 | 1.2e-65 | 222.3 | Calcium-dependent channel, 7TM region, putative phosphate |
XP_057769568.1 |
Pfam | PF13967 |
RSN1_TM | Family | 5 | 168 | 7.2e-38 | 130.4 | Late exocytosis, associated with Golgi transport |
XP_057769568.1 |
Pfam | PF14703 |
PHM7_cyt | Domain | 189 | 344 | 1.1e-37 | 130.6 | Cytosolic domain of 10TM putative phosphate transporter |
XP_057769568.1 |
Pfam | PF02714 |
RSN1_7TM | Family | 358 | 623 | 1.2e-65 | 222.3 | Calcium-dependent channel, 7TM region, putative phosphate |
XP_057769569.1 |
Pfam | PF13967 |
RSN1_TM | Family | 5 | 168 | 7.2e-38 | 130.4 | Late exocytosis, associated with Golgi transport |
XP_057769569.1 |
Pfam | PF14703 |
PHM7_cyt | Domain | 189 | 344 | 1.1e-37 | 130.6 | Cytosolic domain of 10TM putative phosphate transporter |
XP_057769569.1 |
Pfam | PF02714 |
RSN1_7TM | Family | 358 | 623 | 1.2e-65 | 222.3 | Calcium-dependent channel, 7TM region, putative phosphate |
XP_057769570.1 |
Pfam | PF13967 |
RSN1_TM | Family | 5 | 168 | 7.2e-38 | 130.4 | Late exocytosis, associated with Golgi transport |
XP_057769570.1 |
Pfam | PF14703 |
PHM7_cyt | Domain | 189 | 344 | 1.1e-37 | 130.6 | Cytosolic domain of 10TM putative phosphate transporter |
XP_057769570.1 |
Pfam | PF02714 |
RSN1_7TM | Family | 358 | 623 | 1.2e-65 | 222.3 | Calcium-dependent channel, 7TM region, putative phosphate |
XP_057769572.1 |
Pfam | PF13967 |
RSN1_TM | Family | 15 | 53 | 7.5e-10 | 39.4 | Late exocytosis, associated with Golgi transport |
XP_057769572.1 |
Pfam | PF14703 |
PHM7_cyt | Domain | 74 | 229 | 8.4e-38 | 131.0 | Cytosolic domain of 10TM putative phosphate transporter |
XP_057769572.1 |
Pfam | PF02714 |
RSN1_7TM | Family | 243 | 508 | 1.1e-65 | 222.5 | Calcium-dependent channel, 7TM region, putative phosphate |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA5 records
下载 CDS FASTA5 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。