Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G002857`

染色体: Chr06 坐标: 41354673-41359753 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G002857`
名称	SmilChr06G002857
描述	uncharacterized SmilChr06G002857
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	41354673 - 41359753 / `+`

ID 对照

NCBI Gene ID	`LOC130989601`
GeneID	`130989601`
locus_tag	`-`
NCBI Name	`LOC130989601`
原始查询	`LOC130989601`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DUF1336 family protein (DUF1336) [Source:NCBI gene (formerly Entrezgene);Acc:822569]; symbol=AT3G29180; hit=AT3G29180; species=arabidopsis; confidence=high
产物	DUF1336 family protein (DUF1336) [Source:NCBI gene (formerly Entrezgene);Acc:822569]; symbol=AT3G29180; hit=AT3G29180; species=arabidopsis; confidence=high
Arabidopsis	`AT3G29180` (AT3G29180) DUF1336 family protein (DUF1336) [Source:NCBI gene (formerly Entrezgene);Acc:822569] identity=62.4; qcov=0.931; evalue=0; confidence=high
Rice	`Os12g0577600` - identity=65.2; qcov=0.765; evalue=1.97e-161; confidence=high
GO	-
KEGG	-
Pfam	PF07059 (EDR2_C)
InterPro	-
eggNOG	-
NR	GeneID:130989601

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057769594.1`
2	Cell membrane	细胞膜	0.60000	`XP_057769577.1`
3	Cytoplasm	细胞质	0.60000	`XP_057769587.1`
4	Nucleus	细胞核	0.00000	`XP_057769577.1`
5	Chromosome	染色体	0.00000	`XP_057769577.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:41356426`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr6:41356438`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C21
`Chr6:41356456`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B35,C14,C41
`Chr6:41356509`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B139,B46,C18
`Chr6:41356515`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B125,C44,D10
`Chr6:41357514`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr6:41357577`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr6:41358002`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr6:41358080`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B139,C18
`Chr6:41358497`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr6:41358827`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B26,B74,C51,C74
`Chr6:41358830`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C55

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769577.1

551 aa

276

551

EDR2_C

PF07059 EDR2_C 295-536 aa

XP_057769578.1

551 aa

276

551

EDR2_C

PF07059 EDR2_C 295-536 aa

XP_057769579.1

551 aa

276

551

EDR2_C

PF07059 EDR2_C 295-536 aa

XP_057769580.1

551 aa

276

551

EDR2_C

PF07059 EDR2_C 295-536 aa

XP_057769581.1

551 aa

276

551

EDR2_C

PF07059 EDR2_C 295-536 aa

XP_057769582.1

551 aa

276

551

EDR2_C

PF07059 EDR2_C 295-536 aa

XP_057769583.1

551 aa

276

551

EDR2_C

PF07059 EDR2_C 295-536 aa

XP_057769584.1

551 aa

276

551

EDR2_C

PF07059 EDR2_C 295-536 aa

XP_057769585.1

551 aa

276

551

EDR2_C

PF07059 EDR2_C 295-536 aa

XP_057769587.1

517 aa

258

517

EDR2_C

PF07059 EDR2_C 261-502 aa

XP_057769588.1

517 aa

258

517

EDR2_C

PF07059 EDR2_C 261-502 aa

XP_057769589.1

517 aa

258

517

EDR2_C

PF07059 EDR2_C 261-502 aa

XP_057769590.1

517 aa

258

517

EDR2_C

PF07059 EDR2_C 261-502 aa

XP_057769591.1

517 aa

258

517

EDR2_C

PF07059 EDR2_C 261-502 aa

XP_057769592.1

517 aa

258

517

EDR2_C

PF07059 EDR2_C 261-502 aa

XP_057769593.1

517 aa

258

517

EDR2_C

PF07059 EDR2_C 261-502 aa

XP_057769594.1

451 aa

226

451

EDR2_C

PF07059 EDR2_C 195-436 aa

XP_057769595.1

451 aa

226

451

EDR2_C

PF07059 EDR2_C 195-436 aa

XP_057769596.1

451 aa

226

451

EDR2_C

PF07059 EDR2_C 195-436 aa

XP_057769598.1

451 aa

226

451

EDR2_C

PF07059 EDR2_C 195-436 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769577.1`	Pfam	`PF07059`	EDR2_C	Domain	295	536	2.4e-62	211.3	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
`XP_057769578.1`	Pfam	`PF07059`	EDR2_C	Domain	295	536	2.4e-62	211.3	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
`XP_057769579.1`	Pfam	`PF07059`	EDR2_C	Domain	295	536	2.4e-62	211.3	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
`XP_057769580.1`	Pfam	`PF07059`	EDR2_C	Domain	295	536	2.4e-62	211.3	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
`XP_057769581.1`	Pfam	`PF07059`	EDR2_C	Domain	295	536	2.4e-62	211.3	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
`XP_057769582.1`	Pfam	`PF07059`	EDR2_C	Domain	295	536	2.4e-62	211.3	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
`XP_057769583.1`	Pfam	`PF07059`	EDR2_C	Domain	295	536	2.4e-62	211.3	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
`XP_057769584.1`	Pfam	`PF07059`	EDR2_C	Domain	295	536	2.4e-62	211.3	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
`XP_057769585.1`	Pfam	`PF07059`	EDR2_C	Domain	295	536	2.4e-62	211.3	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
`XP_057769587.1`	Pfam	`PF07059`	EDR2_C	Domain	261	502	2.3e-62	211.4	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
`XP_057769588.1`	Pfam	`PF07059`	EDR2_C	Domain	261	502	2.3e-62	211.4	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
`XP_057769589.1`	Pfam	`PF07059`	EDR2_C	Domain	261	502	2.3e-62	211.4	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
`XP_057769590.1`	Pfam	`PF07059`	EDR2_C	Domain	261	502	2.3e-62	211.4	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
`XP_057769591.1`	Pfam	`PF07059`	EDR2_C	Domain	261	502	2.3e-62	211.4	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
`XP_057769592.1`	Pfam	`PF07059`	EDR2_C	Domain	261	502	2.3e-62	211.4	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
`XP_057769593.1`	Pfam	`PF07059`	EDR2_C	Domain	261	502	2.3e-62	211.4	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
`XP_057769594.1`	Pfam	`PF07059`	EDR2_C	Domain	195	436	1.6e-62	211.9	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
`XP_057769595.1`	Pfam	`PF07059`	EDR2_C	Domain	195	436	1.6e-62	211.9	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
`XP_057769596.1`	Pfam	`PF07059`	EDR2_C	Domain	195	436	1.6e-62	211.9	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
`XP_057769598.1`	Pfam	`PF07059`	EDR2_C	Domain	195	436	1.6e-62	211.9	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

20 records

下载 cDNA FASTA

XM_057913595.1
AGGGAGAGCTATTAAGGCCATTTAAAGTCGAATCGTGTTTCATCGCAATAAAAGAAAAGGACAATTTATTATGGGTTTATCTTTGTTTAATGTATGTATGTTGATGTTGTAGTAATAAAAATTTAACCCCACCAGCCATAACATAATACCGAGGAAAAAATGGCACAACGCAACAATTAAAACTCCACGTAGATATCGTCTCCCTCTCTCTCTCTCTGTATATTCTGCAGCGTGAAACAAGAAATCCATGGCCAAGAACA...

XM_057913605.1
GGGAGAGCTATTAAGGCCATTTAAAGTCGAATCGTGTTTCATCGCAATAAAAGAAAAGGACAATTTATTATGGGTTTATCTTTGTTTAATGTATGTATGTTGATGTTGTAGTAATAAAAATTTAACCCCACCAGCCATAACATAATACCGAGGAAAAAATGGCACAACGCAACAATTAAAACTCCACGTAGATATCGTCTCCCTCTCTCTCTCTCTGTATATTCTGCAGCGTGAAACAAGAAATCCATGGCCAAGAACAG...

CDS

20 records

下载 CDS FASTA

LOC130989601
ATGGGTGCTTGTGTATCGTCAGCAGCTACCTCGCGTAAACATTTGAAAACCGTTAAGTTGAAGAGAAAGCGCCGTGGTTTCTCAAGGAAGCACCGTTCAGCTTCTATTACAGATGGAAGCAGAAAAAGAAACAGTGATTCCGGAGCTCGCGTTTCGGATTTTTCAGTAGGTGAGTTTCAAACGACTACCACCTGCAGAAGATCCGAGGTCTCCAGTTCCACATTCCATCTCACTCAGTTGCAGTGGCATCATAGTCAAAT...

Protein

20 records

下载 Protein FASTA

XP_057769577.1
MGACVSSAATSRKHLKTVKLKRKRRGFSRKHRSASITDGSRKRNSDSGARVSDFSVGEFQTTTTCRRSEVSSSTFHLTQLQWHHSQIDANGICQEEAWFDTLSILDSDSDDEFNSVHGDFFPNISNGQVLQHDTSSYYVDSKNNVKEYRESFVTKDGVKEPNGSSLVITQGKEPPAKSDESNSKRKKNMDRSCVSFSGVRDDKNDHEDNIPEKLLKSVLPRLVPSVSFNEKINSSLNSGPQSHRKKSAVIRLSFKRKSLD...

XP_057769578.1
MGACVSSAATSRKHLKTVKLKRKRRGFSRKHRSASITDGSRKRNSDSGARVSDFSVGEFQTTTTCRRSEVSSSTFHLTQLQWHHSQIDANGICQEEAWFDTLSILDSDSDDEFNSVHGDFFPNISNGQVLQHDTSSYYVDSKNNVKEYRESFVTKDGVKEPNGSSLVITQGKEPPAKSDESNSKRKKNMDRSCVSFSGVRDDKNDHEDNIPEKLLKSVLPRLVPSVSFNEKINSSLNSGPQSHRKKSAVIRLSFKRKSLD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器