当前解析结果
SmilChr06G002898| 统一新 Gene ID | SmilChr06G002898 |
|---|---|
| 名称 | SmilChr06G002898 |
| 描述 | alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 41805072 - 41813657 / + |
| NCBI Gene ID | LOC130989617 |
|---|---|
| GeneID | 130989617 |
| locus_tag | - |
| NCBI Name | LOC130989617 |
| 原始查询 | LOC130989617 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic |
| 产物 | alpha-1%2C4 glucan phosphorylase L isozyme%2C chloroplastic/amyloplastic |
| Arabidopsis | AT3G29320 (PHS1)Glycosyl transferase, family 35 [Source:NCBI gene (formerly Entrezgene);Acc:822590] identity=76; qcov=0.958; evalue=0; confidence=high |
| Rice | Os03g0758100 (Pho1)- identity=73.2; qcov=0.958; evalue=0; confidence=high |
| GO | GO:0005737 (cytoplasm); GO:0005980 (glycogen catabolic process); GO:0008184 (glycogen phosphorylase activity); GO:0030170 (pyridoxal phosphate binding) |
| KEGG | smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00343 (Phosphorylase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989617 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 0.80000 | XP_057769617.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057769617.1 |
| 3 | Chloroplast stroma | 叶绿体基质 | 0.20000 | XP_057769617.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057769617.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057769617.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:41805439 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C62 |
Chr6:41805505 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C27 |
Chr6:41805736 |
ATC |
A |
2bp_deletion | frameshift_variant | 11 | A16,B105,B19,B55,B84,C23,C28,C36,C45,C54,C6 |
Chr6:41805740 |
ATT |
A |
2bp_deletion | frameshift_variant | 11 | A16,B105,B19,B55,B84,C23,C28,C36,C45,C54,C6 |
Chr6:41805762 |
AC |
A |
1bp_deletion | frameshift_variant | 11 | A16,B105,B19,B55,B84,C23,C28,C36,C45,C54,C6 |
Chr6:41805764 |
GCA |
G |
2bp_deletion | frameshift_variant | 11 | A16,B105,B19,B55,B84,C23,C28,C36,C45,C54,C6 |
Chr6:41805910 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B50,C47,C7,C85 |
Chr6:41806047 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B100,B131,B132,B54 |
Chr6:41806117 |
A |
AG |
1bp_insertion | frameshift_variant | 2 | B100,B131 |
Chr6:41806117 |
A |
AG |
1bp_insertion | CDS_variant | 2 | B100,B131 |
Chr6:41806136 |
C |
CA |
1bp_insertion | frameshift_variant | 1 | B100 |
Chr6:41806136 |
C |
CA |
1bp_insertion | CDS_variant | 1 | B100 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057769617.1PF00343
Phosphorylase 165-486 aa
PF00343
Phosphorylase 548-946 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769617.1 |
Pfam | PF00343 |
Phosphorylase | Family | 165 | 486 | 3.5e-293 | 975.0 | Carbohydrate phosphorylase |
XP_057769617.1 |
Pfam | PF00343 |
Phosphorylase | Family | 548 | 946 | 3.5e-293 | 975.0 | Carbohydrate phosphorylase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。