Red Sage Omics 丹参基因组信息平台
首页 基因查询 ID 对照表 功能注释 结构域预测 Pfam 基因组工具 蛋白互作 亚细胞定位 表达量 共表达 同源/共线性 GO/KEGG 注释 TF 结合位点 TF 靶基因 EMS 突变 JBrowse BLAST 下载 关于 帮助
数据资源
ID 对照表 功能注释 功能检索 次生代谢专题 文献证据 结构域预测 Pfam 同源/共线性
分析工具
基因组工具 引物设计 同源重组引物设计 核酸翻译 BLAST 蛋白互作 亚细胞定位 共表达 GO/KEGG 注释 功能检索
调控/突变
TF 结合位点 TF 靶基因 EMS 突变
帮助
关于 帮助 资源与版本
中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G002874

染色体: Chr06 坐标: 41573758-41578355 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G002874
名称SmilChr06G002874
描述uncharacterized SmilChr06G002874
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向41573758 - 41578355 / +

ID 对照

NCBI Gene IDLOC130989618
GeneID130989618
locus_tag-
NCBI NameLOC130989618
原始查询LOC130989618

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述T-box transcription factor, putative (DUF863) [Source:NCBI gene (formerly Entrezgene);Acc:843268]; symbol=AT1G69360; hit=AT1G69360; species=arabidopsis; confidence=low
产物T-box transcription factor, putative (DUF863) [Source:NCBI gene (formerly Entrezgene);Acc:843268]; symbol=AT1G69360; hit=AT1G69360; species=arabidopsis; confidence=low
ArabidopsisAT1G69360 (AT1G69360)
T-box transcription factor, putative (DUF863) [Source:NCBI gene (formerly Entrezgene);Acc:843268]
identity=37.7; qcov=0.39; evalue=3.79e-38; confidence=low
RiceOs03g0758600
-
identity=34.7; qcov=0.318; evalue=3.28e-20; confidence=low
GO-
KEGG-
PfamPF05904 (DUF863); PF27565 (ELF3_helical)
InterPro-
eggNOG-
NRGeneID:130989618

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057769618.1
2 Chromosome 染色体 0.00000 XP_057769618.1
3 Centromere 着丝粒 0.00000 XP_057769618.1
4 Chromatin 染色质 0.00000 XP_057769618.1
5 Telomere 端粒 0.00000 XP_057769618.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr6:41575137 G A EMS_canonical_SNV CDS_variant 1 B82
Chr6:41575197 G A EMS_canonical_SNV CDS_variant 1 C14
Chr6:41575239 G A EMS_canonical_SNV CDS_variant 2 A15,D1
Chr6:41575306 C T EMS_canonical_SNV CDS_variant 3 A18,A21,C82
Chr6:41575307 G A EMS_canonical_SNV CDS_variant 1 B32
Chr6:41575550 C T EMS_canonical_SNV CDS_variant 1 C27
Chr6:41575611 G A EMS_canonical_SNV CDS_variant 1 C40
Chr6:41575640 C T EMS_canonical_SNV CDS_variant 1 C5
Chr6:41575716 G A EMS_canonical_SNV CDS_variant 3 B11,C33,C38
Chr6:41575827 C T EMS_canonical_SNV CDS_variant 3 A2,C37,C5
Chr6:41575867 C T EMS_canonical_SNV CDS_variant 2 D10,D11
Chr6:41576731 C T EMS_canonical_SNV CDS_variant 5 A21,B28,B47,C49,D5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769618.1
828 aa
N
1
414
828
ELF3_helical
DUF863
C
PF27565 ELF3_helical 54-82 aa PF05904 DUF863 511-818 aa
XP_057769619.1
828 aa
N
1
414
828
ELF3_helical
DUF863
C
PF27565 ELF3_helical 54-82 aa PF05904 DUF863 511-818 aa
XP_057769620.1
824 aa
N
1
412
824
ELF3_helical
DUF863
C
PF27565 ELF3_helical 54-82 aa PF05904 DUF863 507-814 aa
XP_057769621.1
824 aa
N
1
412
824
ELF3_helical
DUF863
C
PF27565 ELF3_helical 54-82 aa PF05904 DUF863 507-814 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057769618.1 Pfam PF27565 ELF3_helical Domain 54 82 6.5e-12 45.7 ELF3 helical domain
XP_057769618.1 Pfam PF05904 DUF863 Family 511 818 1.7e-80 272.4 Plant protein of unknown function (DUF863)
XP_057769619.1 Pfam PF27565 ELF3_helical Domain 54 82 6.5e-12 45.7 ELF3 helical domain
XP_057769619.1 Pfam PF05904 DUF863 Family 511 818 1.7e-80 272.4 Plant protein of unknown function (DUF863)
XP_057769620.1 Pfam PF27565 ELF3_helical Domain 54 82 6.4e-12 45.8 ELF3 helical domain
XP_057769620.1 Pfam PF05904 DUF863 Family 507 814 2.9e-80 271.6 Plant protein of unknown function (DUF863)
XP_057769621.1 Pfam PF27565 ELF3_helical Domain 54 82 6.4e-12 45.8 ELF3 helical domain
XP_057769621.1 Pfam PF05904 DUF863 Family 507 814 2.9e-80 271.6 Plant protein of unknown function (DUF863)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057913637.1
AGGTTGGAGAATCTGGAAAATTGTGGAGTAATAAATGTCCCAACAGATACCCATGCCTTTCAGGCTTTCACTTCCTAAAAACCAAGGAAATCTGCAATAACAATATTAAATTCCCTTTAGATATAATGTAAATATTTTATTTCATTTTCTCATCTCAAAACTGTACTATTTATTTATCAATCTCTCGTATGGCCATATGGGAAAGAAATGATTGACTCCAGAGGCAGGGATGAAAGAGAGAGAGAGAGAAGTACATAGAA...
XM_057913636.1
AGATACCCATGCCTTTCAGGCTTTCACTTCCTAAAAACCAAGGAAATCTGCAATAACAATATTAAATTCCCTTTAGATATAATGTAAATATTTTATTTCATTTTCTCATCTCAAAACTGTACTATTTATTTATCAATCTCTCGTATGGCCATATGGGAAAGAAATGATTGACTCCAGAGGCAGGGATGAAAGAGAGAGAGAGAGAAGTACATAGAATAAGGTGTGATTCCACATGTTGACAAATTTCAAGTCATTGTTCT...

CDS

4 records

下载 CDS FASTA
LOC130989618
ATGGGAACAAAGATACAATCTAATCCGTTTCTGCGGGAATATCACTCTGTCATTGACCTTGATGCAAGCACAAGCAATGCAACGAGATCTTCGTATTATGAAAACGGGAAACTGCAGAATGGAACGAATCCAGACTCAATAATGTCTTTTGACATAGAGAAAGTGAAGCAGACGATTCTCGAGCATGAATCAGTTTTCAGAAACCAGCTCGGAGAACTGCACCGCCTTTATGGAAGGCAACGGGAGCTGATGAACGAGAT...
LOC130989618
ATGGGAACAAAGATACAATCTAATCCGTTTCTGCGGGAATATCACTCTGTCATTGACCTTGATGCAAGCACAAGCAATGCAACGAGATCTTCGTATTATGAAAACGGGAAACTGCAGAATGGAACGAATCCAGACTCAATAATGTCTTTTGACATAGAGAAAGTGAAGCAGACGATTCTCGAGCATGAATCAGTTTTCAGAAACCAGCTCGGAGAACTGCACCGCCTTTATGGAAGGCAACGGGAGCTGATGAACGAGAT...

Protein

4 records

下载 Protein FASTA
XP_057769618.1
MGTKIQSNPFLREYHSVIDLDASTSNATRSSYYENGKLQNGTNPDSIMSFDIEKVKQTILEHESVFRNQLGELHRLYGRQRELMNEIKRRGMNKDEVVEEKFRLSYLLSPFPTENAKRSWNPSHNTIFRGGTYNLGFQERFSKFPVAESTSEKRNHLAACDGDDKNSLCAVQASQHGANALTFGLYNRNGYPGDERIINPRNGVSDRLVLSRAEISGNSCSNLNLVTKDFFHGSLDIMNKEGSLSIRGLRNERSGKEHLS...
XP_057769619.1
MGTKIQSNPFLREYHSVIDLDASTSNATRSSYYENGKLQNGTNPDSIMSFDIEKVKQTILEHESVFRNQLGELHRLYGRQRELMNEIKRRGMNKDEVVEEKFRLSYLLSPFPTENAKRSWNPSHNTIFRGGTYNLGFQERFSKFPVAESTSEKRNHLAACDGDDKNSLCAVQASQHGANALTFGLYNRNGYPGDERIINPRNGVSDRLVLSRAEISGNSCSNLNLVTKDFFHGSLDIMNKEGSLSIRGLRNERSGKEHLS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器