Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G002889`

染色体: Chr06 坐标: 41749945-41753776 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G002889`
名称	SmilChr06G002889
描述	uncharacterized SmilChr06G002889
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	41749945 - 41753776 / `+`

ID 对照

NCBI Gene ID	`LOC130989620`
GeneID	`130989620`
locus_tag	`-`
NCBI Name	`LOC130989620`
原始查询	`LOC130989620`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os03g0211400; species=rice; confidence=weak
产物	hit=Os03g0211400; species=rice; confidence=weak
Arabidopsis	`AT5G39380` (AT5G39380) Plant calmodulin-binding protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:833934] identity=34.4; qcov=0.442; evalue=1.46e-27; confidence=low
Rice	`Os03g0211400` - identity=52.9; qcov=0.199; evalue=2.54e-31; confidence=weak
GO	GO:0005516 (calmodulin binding)
KEGG	-
Pfam	PF07839 (CaM_binding)
InterPro	-
eggNOG	-
NR	GeneID:130989620

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoskeleton	细胞骨架	1.00000	`XP_057769623.1`
2	Nucleus	细胞核	0.80000	`XP_057769623.1`
3	Nucleus membrane	核膜	0.60000	`XP_057769623.1`
4	Phragmoplast	Phragmoplast	0.20000	`XP_057769623.1`
5	Spindle	Spindle	0.20000	`XP_057769623.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:41751133`	`C`	`CT`	1bp_insertion	frameshift_variant	62	A1,A13,A3,A6,A8,A9,B100,B104,B11,B110,B111,B115,B117,B118,B119,B12,B120,B121,B123,B124,B125,B127,B128,B129,B131,B133,B137,B140,B21,B26,B30,B37,B45,B50,B59,B6,B62,B68,B70,B74,B85,B86,B88,B89,B9,B95,B98,B99,C10,C12,C20,C38,C40,C41,C42,C48,C50,C63,C67,C76,C84,D11
`Chr6:41751236`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C23
`Chr6:41751437`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B128,C19
`Chr6:41751458`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A1,A8,B140,C74
`Chr6:41751669`	`GGC`	`G`	2bp_deletion	frameshift_variant	12	A18,A6,B112,B120,B124,B26,B59,B75,B86,B89,C10,C40
`Chr6:41751757`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B33,C19,C20,C50,C77
`Chr6:41751759`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C77
`Chr6:41751768`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C50
`Chr6:41751779`	`TAA`	`T`	2bp_deletion	frameshift_variant	1	C77
`Chr6:41751779`	`TAA`	`T`	2bp_deletion	CDS_variant	1	C77
`Chr6:41751862`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A8
`Chr6:41752250`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B35

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769623.1

684 aa

342

684

CaM_binding

PF07839 CaM_binding 563-672 aa

XP_057769625.1

744 aa

372

744

CaM_binding

PF07839 CaM_binding 623-732 aa

XP_057769626.1

684 aa

342

684

CaM_binding

PF07839 CaM_binding 563-672 aa

XP_057769627.1

684 aa

342

684

CaM_binding

PF07839 CaM_binding 563-672 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769623.1`	Pfam	`PF07839`	CaM_binding	Domain	563	672	6e-32	111.5	Plant calmodulin-binding domain
`XP_057769625.1`	Pfam	`PF07839`	CaM_binding	Domain	623	732	6.8e-32	111.4	Plant calmodulin-binding domain
`XP_057769626.1`	Pfam	`PF07839`	CaM_binding	Domain	563	672	6e-32	111.5	Plant calmodulin-binding domain
`XP_057769627.1`	Pfam	`PF07839`	CaM_binding	Domain	563	672	6e-32	111.5	Plant calmodulin-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057913640.1
TGAAAATTGCTTCTAATTCCAAATATTTATCGCGCATGCATACATTTCTTCTCACATAAGTTTTTCCATTAAAATGAAAAGTTACTTATAAAAGAACTAAATGAAAAAGAAAAAAAATACAATATGGCGAGTGATTAAAGAAATAATTTAAAAAAACAAAAAACGAGAAGCAGAGGAAAACTGGCGCCGACCACCCTCTATAGCTCGTTCTCACCTTCCGCCATCTCTCTCTCTCTCTCTCTCACACACACACACACACA...

XM_057913642.1
ATTAAAATGAAAAGTTACTTATAAAAGAACTAAATGAAAAAGAAAAAAAATACAATATGGCGAGTGATTAAAGAAATAATTTAAAAAAACAAAAAACGAGAAGCAGAGGAAAACTGGCGCCGACCACCCTCTATAGCTCGTTCTCACCTTCCGCCATCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACAGAGATATACACAATGCAAAACAGACCTCTCTCTCTATCTCTCTGAACCAGAAATTGTGCAA...

CDS

4 records

下载 CDS FASTA

LOC130989620
ATGAATTGTTTTTGGAGAGAGGCTAGGAAGGGCCCTAAATCATTGTTTACTTTTTTTTTCCCTTCCTTTTTTCTTTCTTTCATGGTAGAGGCCATTGGCATTCATTTAATTGTTTATTTGTATGTTTTCTTGTGTTGTAGGATTCTTGTTTCCCAGTTCTCTATCACAATTTCTGTTTGCATGGCTGAAGTAAGTGTTGATTCTCTGGTTACTCCCGAAAAAGATAAATTAGATGGGAAAATAAACGAAGGTTCTGATGG...

LOC130989620
ATGGCTGAAGTAAGTGTTGATTCTCTGGTTACTCCCGAAAAAGATAAATTAGATGGGAAAATAAACGAAGGTTCTGATGGGAATCAGGATTCTCTGAGTAATGGGCGCAGCACTGATACCCCTCCTCTTAGAGCATCTGTTGGTTCCTACCATGCTGGACACAGTTCCTTGAGGAGTTCTGCAGACAAATCGGAGTCTGCCAACAGTAGTCAGAAAGCGGTTCCTCGTTATCTCAGAGCATCTACTGGCTCTTGCCATGA...

Protein

4 records

下载 Protein FASTA

XP_057769623.1
MAEVSVDSLVTPEKDKLDGKINEGSDGNQDSLSNGRSTDTPPLRASVGSYHAGHSSLRSSADKSESANSSQKAVPRYLRASTGSCHDFCKFGKQHSIETKARKPVRKRIEKLSPAQIPVEIFVSGGKKEEEVVSGGKKEEVVSGGKKKEEVVSGGKKKEEVVSGGEKKEEVVNHGPSIDKKVHSTGKKPSLDTKSYPTKPRTSLTLSKEKATKHNPSTYTNNHSPSVPSPHKKSNMQKPKLSTYPSKQNDSSGSKTLLPK...

XP_057769625.1
MNCFWREARKGPKSLFTFFFPSFFLSFMVEAIGIHLIVYLYVFLCCRILVSQFSITISVCMAEVSVDSLVTPEKDKLDGKINEGSDGNQDSLSNGRSTDTPPLRASVGSYHAGHSSLRSSADKSESANSSQKAVPRYLRASTGSCHDFCKFGKQHSIETKARKPVRKRIEKLSPAQIPVEIFVSGGKKEEEVVSGGKKEEVVSGGKKKEEVVSGGKKKEEVVSGGEKKEEVVNHGPSIDKKVHSTGKKPSLDTKSYPTKP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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