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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G002892

染色体: Chr06 坐标: 41763759-41771343 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G002892
名称SmilChr06G002892
描述pentatricopeptide repeat-containing protein At3g29290
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向41763759 - 41771343 / +

ID 对照

NCBI Gene IDLOC130989626
GeneID130989626
locus_tag-
NCBI NameLOC130989626
原始查询LOC130989626

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At3g29290
产物pentatricopeptide repeat-containing protein At3g29290
ArabidopsisAT3G29290 (emb2076)
Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:822586]
identity=60.1; qcov=0.751; evalue=0; confidence=high
RiceOs03g0211600
-
identity=51.8; qcov=0.487; evalue=6.29e-103; confidence=medium
GOGO:0003729 (mRNA binding); GO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130989626

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057769633.1
2 Chloroplast stroma 叶绿体基质 0.60000 XP_057769633.1
3 Nucleus 细胞核 0.00000 XP_057769633.1
4 Chromosome 染色体 0.00000 XP_057769633.1
5 Centromere 着丝粒 0.00000 XP_057769633.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr6:41764455 G A EMS_canonical_SNV CDS_variant 5 B122,B93,C41,C48,C73
Chr6:41764512 G A EMS_canonical_SNV CDS_variant 5 B122,B93,C41,C48,C73
Chr6:41764514 G A EMS_canonical_SNV CDS_variant 5 B122,B93,C41,C48,C73
Chr6:41764549 G A EMS_canonical_SNV CDS_variant 5 B122,B93,C41,C48,C73
Chr6:41764640 C T EMS_canonical_SNV CDS_variant 5 A19,B17,B76,B95,B99
Chr6:41764893 G A EMS_canonical_SNV CDS_variant 3 B106,B46,C35
Chr6:41764970 C T EMS_canonical_SNV CDS_variant 2 B128,C19
Chr6:41764972 G A EMS_canonical_SNV CDS_variant 3 B106,B46,C35
Chr6:41765087 C T EMS_canonical_SNV CDS_variant 5 A22,A5,B24,C17,C48
Chr6:41765235 C T EMS_canonical_SNV CDS_variant 1 C23
Chr6:41765298 C T EMS_canonical_SNV CDS_variant 5 B122,B93,C41,C48,C73
Chr6:41765383 G A EMS_canonical_SNV CDS_variant 1 B26

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769633.1
587 aa
N
1
294
587
PPR_3
PPR
PPR
PPR_long
PPR
PPR_3
PPR
PPR_2
PPR
TPR_24
PPR
PPR
PPR_3
PPR_2
PPR
PPR
C
PF13812 PPR_3 182-236 aa PF01535 PPR 195-222 aa PF01535 PPR 265-293 aa PF17177 PPR_long 276-410 aa PF01535 PPR 300-330 aa PF13812 PPR_3 323-381 aa PF01535 PPR 339-363 aa PF13041 PPR_2 367-414 aa PF01535 PPR 370-399 aa PF23276 TPR_24 371-500 aa PF01535 PPR 405-433 aa PF01535 PPR 442-471 aa PF13812 PPR_3 462-520 aa PF13041 PPR_2 474-520 aa PF01535 PPR 477-503 aa PF01535 PPR 541-570 aa
XP_057769634.1
587 aa
N
1
294
587
PPR_3
PPR
PPR
PPR_long
PPR
PPR_3
PPR
PPR_2
PPR
TPR_24
PPR
PPR
PPR_3
PPR_2
PPR
PPR
C
PF13812 PPR_3 182-236 aa PF01535 PPR 195-222 aa PF01535 PPR 265-293 aa PF17177 PPR_long 276-410 aa PF01535 PPR 300-330 aa PF13812 PPR_3 323-381 aa PF01535 PPR 339-363 aa PF13041 PPR_2 367-414 aa PF01535 PPR 370-399 aa PF23276 TPR_24 371-500 aa PF01535 PPR 405-433 aa PF01535 PPR 442-471 aa PF13812 PPR_3 462-520 aa PF13041 PPR_2 474-520 aa PF01535 PPR 477-503 aa PF01535 PPR 541-570 aa
XP_057769635.1
587 aa
N
1
294
587
PPR_3
PPR
PPR
PPR_long
PPR
PPR_3
PPR
PPR_2
PPR
TPR_24
PPR
PPR
PPR_3
PPR_2
PPR
PPR
C
PF13812 PPR_3 182-236 aa PF01535 PPR 195-222 aa PF01535 PPR 265-293 aa PF17177 PPR_long 276-410 aa PF01535 PPR 300-330 aa PF13812 PPR_3 323-381 aa PF01535 PPR 339-363 aa PF13041 PPR_2 367-414 aa PF01535 PPR 370-399 aa PF23276 TPR_24 371-500 aa PF01535 PPR 405-433 aa PF01535 PPR 442-471 aa PF13812 PPR_3 462-520 aa PF13041 PPR_2 474-520 aa PF01535 PPR 477-503 aa PF01535 PPR 541-570 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057769633.1 Pfam PF13812 PPR_3 Repeat 182 236 6.7e-29 100.5 Pentatricopeptide repeat domain
XP_057769633.1 Pfam PF01535 PPR Repeat 195 222 1e-42 142.1 PPR repeat
XP_057769633.1 Pfam PF01535 PPR Repeat 265 293 1e-42 142.1 PPR repeat
XP_057769633.1 Pfam PF17177 PPR_long Repeat 276 410 1.2e-18 68.0 Pentacotripeptide-repeat region of PRORP
XP_057769633.1 Pfam PF01535 PPR Repeat 300 330 1e-42 142.1 PPR repeat
XP_057769633.1 Pfam PF13812 PPR_3 Repeat 323 381 6.7e-29 100.5 Pentatricopeptide repeat domain
XP_057769633.1 Pfam PF01535 PPR Repeat 339 363 1e-42 142.1 PPR repeat
XP_057769633.1 Pfam PF13041 PPR_2 Repeat 367 414 2.4e-59 197.9 PPR repeat family
XP_057769633.1 Pfam PF01535 PPR Repeat 370 399 1e-42 142.1 PPR repeat
XP_057769633.1 Pfam PF23276 TPR_24 Repeat 371 500 4.7e-22 79.0 Pentatricopeptide repeat-containing protein
XP_057769633.1 Pfam PF01535 PPR Repeat 405 433 1e-42 142.1 PPR repeat
XP_057769633.1 Pfam PF01535 PPR Repeat 442 471 1e-42 142.1 PPR repeat
XP_057769633.1 Pfam PF13812 PPR_3 Repeat 462 520 6.7e-29 100.5 Pentatricopeptide repeat domain
XP_057769633.1 Pfam PF13041 PPR_2 Repeat 474 520 2.4e-59 197.9 PPR repeat family
XP_057769633.1 Pfam PF01535 PPR Repeat 477 503 1e-42 142.1 PPR repeat
XP_057769633.1 Pfam PF01535 PPR Repeat 541 570 1e-42 142.1 PPR repeat
XP_057769634.1 Pfam PF13812 PPR_3 Repeat 182 236 6.7e-29 100.5 Pentatricopeptide repeat domain
XP_057769634.1 Pfam PF01535 PPR Repeat 195 222 1e-42 142.1 PPR repeat
XP_057769634.1 Pfam PF01535 PPR Repeat 265 293 1e-42 142.1 PPR repeat
XP_057769634.1 Pfam PF17177 PPR_long Repeat 276 410 1.2e-18 68.0 Pentacotripeptide-repeat region of PRORP
XP_057769634.1 Pfam PF01535 PPR Repeat 300 330 1e-42 142.1 PPR repeat
XP_057769634.1 Pfam PF13812 PPR_3 Repeat 323 381 6.7e-29 100.5 Pentatricopeptide repeat domain
XP_057769634.1 Pfam PF01535 PPR Repeat 339 363 1e-42 142.1 PPR repeat
XP_057769634.1 Pfam PF13041 PPR_2 Repeat 367 414 2.4e-59 197.9 PPR repeat family
XP_057769634.1 Pfam PF01535 PPR Repeat 370 399 1e-42 142.1 PPR repeat
XP_057769634.1 Pfam PF23276 TPR_24 Repeat 371 500 4.7e-22 79.0 Pentatricopeptide repeat-containing protein
XP_057769634.1 Pfam PF01535 PPR Repeat 405 433 1e-42 142.1 PPR repeat
XP_057769634.1 Pfam PF01535 PPR Repeat 442 471 1e-42 142.1 PPR repeat
XP_057769634.1 Pfam PF13812 PPR_3 Repeat 462 520 6.7e-29 100.5 Pentatricopeptide repeat domain
XP_057769634.1 Pfam PF13041 PPR_2 Repeat 474 520 2.4e-59 197.9 PPR repeat family
XP_057769634.1 Pfam PF01535 PPR Repeat 477 503 1e-42 142.1 PPR repeat
XP_057769634.1 Pfam PF01535 PPR Repeat 541 570 1e-42 142.1 PPR repeat
XP_057769635.1 Pfam PF13812 PPR_3 Repeat 182 236 6.7e-29 100.5 Pentatricopeptide repeat domain
XP_057769635.1 Pfam PF01535 PPR Repeat 195 222 1e-42 142.1 PPR repeat
XP_057769635.1 Pfam PF01535 PPR Repeat 265 293 1e-42 142.1 PPR repeat
XP_057769635.1 Pfam PF17177 PPR_long Repeat 276 410 1.2e-18 68.0 Pentacotripeptide-repeat region of PRORP
XP_057769635.1 Pfam PF01535 PPR Repeat 300 330 1e-42 142.1 PPR repeat
XP_057769635.1 Pfam PF13812 PPR_3 Repeat 323 381 6.7e-29 100.5 Pentatricopeptide repeat domain
XP_057769635.1 Pfam PF01535 PPR Repeat 339 363 1e-42 142.1 PPR repeat
XP_057769635.1 Pfam PF13041 PPR_2 Repeat 367 414 2.4e-59 197.9 PPR repeat family
XP_057769635.1 Pfam PF01535 PPR Repeat 370 399 1e-42 142.1 PPR repeat
XP_057769635.1 Pfam PF23276 TPR_24 Repeat 371 500 4.7e-22 79.0 Pentatricopeptide repeat-containing protein
XP_057769635.1 Pfam PF01535 PPR Repeat 405 433 1e-42 142.1 PPR repeat
XP_057769635.1 Pfam PF01535 PPR Repeat 442 471 1e-42 142.1 PPR repeat
XP_057769635.1 Pfam PF13812 PPR_3 Repeat 462 520 6.7e-29 100.5 Pentatricopeptide repeat domain
XP_057769635.1 Pfam PF13041 PPR_2 Repeat 474 520 2.4e-59 197.9 PPR repeat family
XP_057769635.1 Pfam PF01535 PPR Repeat 477 503 1e-42 142.1 PPR repeat
XP_057769635.1 Pfam PF01535 PPR Repeat 541 570 1e-42 142.1 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057913650.1
CGTTATTCAAAAATCGTGTTAATTGAATCACTTACACACAATCCTAGCCGCCCCATCACCACCTCTGACCTCTCCTCCTCTCAGCCAGCAGAGCCCATCGCTGCTCAGCCCGTCGCCGTCGCCGCCGCCGCCGCGCAGTCTTTATATTCCAGATATTGAAGCTTTCTTGCTTCACAGAAGGAGGTTCTGATGTATCTAACCTGCTTCATTGAATGCTAATTTGGGGGGAGGAAGTTCTTTATTTCAGCTTCTAGGGTTCT...
XM_057913652.1
CAAAAATCGTGTTAATTGAATCACTTACACACAATCCTAGCCGCCCCATCACCACCTCTGACCTCTCCTCCTCTCAGCCAGCAGAGCCCATCGCTGCTCAGCCCGTCGCCGTCGCCGCCGCCGCCGCGCAGTCTTTATATTCCAGATATTGAAGCTTTCTTGCTTCACAGAAGGAGGTTCTGATGTATCTAACCTGCTTCATTGAATGCTAATTTGGGGGGAGGAAGTTCTTTATTTCAGCTTCTAGGGTTCTTTGTGAT...

CDS

3 records

下载 CDS FASTA
LOC130989626
ATGGCAGAGGTGCTGAGCACTTCACCAGCATGTTCTGTTTCGATTTATTCAAGAATTCATGATATTAGAATCCCTTTCCGGTGCATCAATTGCTCTGCGTGTTTTGATTGGGGATGGAAGATGAATATCAATTCTGTATCTGCCAAAAATCATGGTTTTGGCGTGGCTGAAAACTCATATTTAAGAACTACTCCTAAACAACGGGGAAGTTTTCTGTTATGCAAATCGAAAGAGAGTGAAATTTTATGTGGTATACGTAG...
LOC130989626
ATGGCAGAGGTGCTGAGCACTTCACCAGCATGTTCTGTTTCGATTTATTCAAGAATTCATGATATTAGAATCCCTTTCCGGTGCATCAATTGCTCTGCGTGTTTTGATTGGGGATGGAAGATGAATATCAATTCTGTATCTGCCAAAAATCATGGTTTTGGCGTGGCTGAAAACTCATATTTAAGAACTACTCCTAAACAACGGGGAAGTTTTCTGTTATGCAAATCGAAAGAGAGTGAAATTTTATGTGGTATACGTAG...

Protein

3 records

下载 Protein FASTA
XP_057769633.1
MAEVLSTSPACSVSIYSRIHDIRIPFRCINCSACFDWGWKMNINSVSAKNHGFGVAENSYLRTTPKQRGSFLLCKSKESEILCGIRSNVASLEFEPVCEGQKEGLDENGSQNILPPWGGLADQELDDRSCLDVRSTMPLEAVHESMDEIHYLEERDEEVLSQRILKLSRANKVRSALALYRSMAVSGLLPRSHACNSLLTCLLRDRRLDDALRVFEFMRSNEIVTGHTYSLILKAVADVWGRDVALTMFEEAERDGKTKR...
XP_057769634.1
MAEVLSTSPACSVSIYSRIHDIRIPFRCINCSACFDWGWKMNINSVSAKNHGFGVAENSYLRTTPKQRGSFLLCKSKESEILCGIRSNVASLEFEPVCEGQKEGLDENGSQNILPPWGGLADQELDDRSCLDVRSTMPLEAVHESMDEIHYLEERDEEVLSQRILKLSRANKVRSALALYRSMAVSGLLPRSHACNSLLTCLLRDRRLDDALRVFEFMRSNEIVTGHTYSLILKAVADVWGRDVALTMFEEAERDGKTKR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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