Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G002918`

染色体: Chr06 坐标: 42017772-42029486 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G002918`
名称	SmilChr06G002918
描述	vacuolar protein sorting-associated protein 52 B-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	42017772 - 42029486 / `-`

ID 对照

NCBI Gene ID	`LOC130989627`
GeneID	`130989627`
locus_tag	`-`
NCBI Name	`LOC130989627`
原始查询	`LOC130989627`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	vacuolar protein sorting-associated protein 52 B-like
产物	vacuolar protein sorting-associated protein 52 B-like
Arabidopsis	`AT1G71270` (POK) Vps52 / Sac2 family [Source:NCBI gene (formerly Entrezgene);Acc:843468] identity=76.6; qcov=0.792; evalue=0; confidence=high
Rice	`Os03g0417900` (OSJNBb0028K20.3) - identity=72.7; qcov=0.794; evalue=0; confidence=high
GO	GO:0000938 (GARP complex); GO:0006896 (Golgi to vacuole transport); GO:0019905 (syntaxin binding); GO:0032456 (endocytic recycling); GO:0042147 (retrograde transport, endosome to Golgi)
KEGG	-
Pfam	PF04129 (Vps52_CC); PF09763 (Sec3_CC); PF20655 (Vps52_C)
InterPro	-
eggNOG	-
NR	GeneID:130989627

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasmic vesicle	细胞质囊泡	0.80000	`XP_057769636.1`
2	Golgi apparatus	高尔基体	0.80000	`XP_057769636.1`
3	Trans-golgi network	Trans-golgi network	0.80000	`XP_057769636.1`
4	Clathrin-coated vesicle	Clathrin-coated vesicle	0.60000	`XP_057769636.1`
5	Endocytic vesicle	Endocytic vesicle	0.40000	`XP_057769636.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:42017979`	`TA`	`T`	1bp_deletion	frameshift_variant	1	D11
`Chr6:42017979`	`TA`	`T`	1bp_deletion	CDS_variant	1	D11
`Chr6:42017982`	`T`	`TG`	1bp_insertion	frameshift_variant	1	C74
`Chr6:42017982`	`T`	`TG`	1bp_insertion	CDS_variant	1	C74
`Chr6:42018036`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B134
`Chr6:42018038`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	C27,C49,C8,D2
`Chr6:42018052`	`T`	`TG`	1bp_insertion	frameshift_variant	5	B135,C18,C49,C70,C74
`Chr6:42018052`	`T`	`TG`	1bp_insertion	CDS_variant	5	B135,C18,C49,C70,C74
`Chr6:42018064`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A18,C13
`Chr6:42018114`	`A`	`AT`	1bp_insertion	frameshift_variant	7	B107,B27,B38,B39,B44,C12,C55
`Chr6:42018140`	`AT`	`A`	1bp_deletion	frameshift_variant	172	A1,A13,A14,A15,A16,A18,A20,A22,A24,A3,A4,A5,B100,B101,B102,B103,B104,B106,B109,B11,B110,B111,B112,B114,B117,B118,B121,B122,B123,B126,B128,B129,B13,B130,B131,B133,B134,B136,B137,B138,B139,B17,B18,B2,B20,B21,B23,B27,B3,B30,B31,B34,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B50,B51,B52,B53,B54,B55,B56,B57,B59,B6,B60,B61,B62,B64,B65,B66,B69,B7,B71,B72,B74,B75,B76,B78,B79,B8,B80,B81,B83,B84,B85,B86,B87,B88,B89,B9,B90,B91,B92,B93,B95,B96,B97,B98,B99,C1,C11,C12,C15,C16,C17,C19,C20,C23,C26,C27,C29,C3,C31,C32,C33,C34,C35,C4,C41,C44,C45,C46,C48,C49,C5,C52,C53,C54,C55,C56,C57,C59,C61,C62,C63,C67,C69,C7,C71,C72,C73,C74,C76,C77,C8,C80,C82,C83,C86,C87,C9,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9
`Chr6:42018164`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B128,C19

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769636.1

539 aa

270

539

Sec3_CC

Vps52_CC

Vps52_C

PF09763 Sec3_CC 13-128 aa PF04129 Vps52_CC 30-203 aa PF20655 Vps52_C 220-394 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769636.1`	Pfam	`PF09763`	Sec3_CC	Repeat	13	128	6e-07	30.1	Exocyst complex component Sec3, coiled-coil
`XP_057769636.1`	Pfam	`PF04129`	Vps52_CC	Repeat	30	203	3.3e-63	213.2	Vps52/Sac2 family, coiled-coil
`XP_057769636.1`	Pfam	`PF20655`	Vps52_C	Repeat	220	394	1.7e-63	215.6	Vps52, C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057913653.1
ATATGATTAGAGATATCTACGTAGGTCGAGGCTAATGAGGGGCCCAGAAATGTGCTGGATTTGGGAGCATTTGTCGGAGAGTTGACTGATGAAGACAATGCGGCCAGTGATGATTTCTCACTTGAAGGACTAGAGCAGGAGCTTCAAGACTGTAAAACTGATGATGCGGTTGCTATGATACTGTCGAAAGGTTCATCATTGCGGGACTACACCAGGGATGTCGAGAACAATCTAAGGCAGATCGAACTCGAGTCTATTGA...

CDS

1 records

下载 CDS FASTA

LOC130989627
ATGATACTGTCGAAAGGTTCATCATTGCGGGACTACACCAGGGATGTCGAGAACAATCTAAGGCAGATCGAACTCGAGTCTATTGAGGACTATATTAAAGAAAGTGACAATCTAGTCTCACTTCATGATCAAATTTATGATTGTGACACCATCCTTTCGCAAATGGAAAAGCTCCTTAGTGAATTTCAGGCAGAGATAGGTTCAATTAGTTCTGACATAAAGATTCTTCAAGAGAAGTCTTTGTATATGGGGCTCAAGCT...

Protein

1 records

下载 Protein FASTA

XP_057769636.1
MILSKGSSLRDYTRDVENNLRQIELESIEDYIKESDNLVSLHDQIYDCDTILSQMEKLLSEFQAEIGSISSDIKILQEKSLYMGLKLKNRKVAESKLAKFVEEIIVPPRMIDIIVDGEVNEEYMRTLEILSKKLKFVGIDTMVKTSKALNDVQPELEKLRQKAVSKVFDFMVQKLNALRKPKTNVQILQQSVLIKYKYVILFLKEHGKEVYHDVRAAYIDTMNKVLSTNIRAYIQALEKLQLDIATSNDLIGIDTRSTSL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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