当前解析结果
SmilChr06G002877| 统一新 Gene ID | SmilChr06G002877 |
|---|---|
| 名称 | SmilChr06G002877 |
| 描述 | probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 41585470 - 41587903 / + |
| NCBI Gene ID | LOC130989633 |
|---|---|
| GeneID | 130989633 |
| locus_tag | - |
| NCBI Name | LOC130989633 |
| 原始查询 | LOC130989633 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 |
| 产物 | probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 |
| Arabidopsis | AT5G39410 (AT5G39410)Saccharopine dehydrogenase [Source:NCBI gene (formerly Entrezgene);Acc:833937] identity=70; qcov=0.987; evalue=0; confidence=high |
| Rice | Os07g0597100- identity=66.1; qcov=0.478; evalue=1.26e-103; confidence=medium |
| GO | GO:0005739 (mitochondrion); GO:0005811 (lipid droplet); GO:0005886 (plasma membrane); GO:0009247 (glycolipid biosynthetic process) |
| KEGG | - |
| Pfam | PF03435 (Sacchrp_dh_NADP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989633 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.60000 | XP_057769645.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057769645.1 |
| 3 | Chloroplast membrane | 叶绿体膜 | 0.20000 | XP_057769645.1 |
| 4 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057769645.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057769645.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:41585649 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | B37 |
Chr6:41585649 |
GA |
G |
1bp_deletion | CDS_variant | 1 | B37 |
Chr6:41585670 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B103,B22,B73,B83,C59 |
Chr6:41585796 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A1 |
Chr6:41586117 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B113,B54,B71 |
Chr6:41586246 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B47,C49 |
Chr6:41587139 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B106 |
Chr6:41587241 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B106 |
Chr6:41587301 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A1 |
Chr6:41587485 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B107,B93,C41,C48,D2 |
Chr6:41587489 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
Chr6:41587523 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057769645.1PF03435
Sacchrp_dh_NADP 16-149 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769645.1 |
Pfam | PF03435 |
Sacchrp_dh_NADP | Family | 16 | 149 | 6.5e-09 | 36.9 | Saccharopine dehydrogenase NADP binding domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。