Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G002891

染色体: Chr06 坐标: 41761342-41763724 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G002891
名称SmilChr06G002891
描述uncharacterized SmilChr06G002891
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向41761342 - 41763724 / -

ID 对照

NCBI Gene IDLOC130989652
GeneID130989652
locus_tag-
NCBI NameLOC130989652
原始查询LOC130989652

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:822585]; symbol=AT3G29280; hit=AT3G29280; species=arabidopsis; confidence=high
产物uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:822585]; symbol=AT3G29280; hit=AT3G29280; species=arabidopsis; confidence=high
ArabidopsisAT3G29280 (AT3G29280)
uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:822585]
identity=72.3; qcov=0.809; evalue=1.25e-81; confidence=high
RiceOs03g0257000
-
identity=61.9; qcov=0.847; evalue=5.22e-76; confidence=high
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130989652

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057769676.1
2 Cytoplasm 细胞质 1.00000 XP_057769676.1
3 Nucleoplasm 核质 0.20000 XP_057769676.1
4 Cytosol 细胞质基质 0.20000 XP_057769676.1
5 Chromosome 染色体 0.00000 XP_057769676.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr6:41761561 G A EMS_canonical_SNV CDS_variant 1 D1
Chr6:41761587 CT C 1bp_deletion frameshift_variant 1 D1
Chr6:41761587 CT C 1bp_deletion CDS_variant 1 D1
Chr6:41761589 GC G 1bp_deletion frameshift_variant 1 D1
Chr6:41761589 GC G 1bp_deletion CDS_variant 1 D1
Chr6:41761598 T TCA 2bp_insertion frameshift_variant 1 D1
Chr6:41761598 T TCA 2bp_insertion CDS_variant 1 D1
Chr6:41761601 AGT A 2bp_deletion frameshift_variant 1 D1
Chr6:41761601 AGT A 2bp_deletion CDS_variant 1 D1
Chr6:41761604 CCT C 2bp_deletion frameshift_variant 1 D1
Chr6:41761604 CCT C 2bp_deletion CDS_variant 1 D1
Chr6:41761623 C T EMS_canonical_SNV CDS_variant 3 A8,B127,D8

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057913693.1
ACAAATATAAATATTAAAATTTGGGAAAAAGCTAAAACCCTTCTTCGACGTCCTCGTTTGGAGCACGCCAAAACATCACAAATTTGAAACTCCCTCGGAATTTGGTGACAGAACCAGCAGAAACTAAAGAAATGGGAGAAAAGAAGGAAGAAAAGGTGATGGAGGGAGTTGCATCATTAGCCCTTTTGCCGACTGGCTCTATTTCCGGCCATTTTATTCAGCTGCCCAACTCCATCTGTTATGGCCTCCATGGAGCTGAA...

CDS

1 records

下载 CDS FASTA
LOC130989652
ATGGGAGAAAAGAAGGAAGAAAAGGTGATGGAGGGAGTTGCATCATTAGCCCTTTTGCCGACTGGCTCTATTTCCGGCCATTTTATTCAGCTGCCCAACTCCATCTGTTATGGCCTCCATGGAGCTGAACTGGAGTGTGTAAGAGAGTGCAGCCATGGTGACGATTACCGCTTGATCAAGCTGACTGTAACAGATTATAACAGTAAGAGAGAAAGAAACGTGGTGGTGGAGTGCAGAGGGCATGATGCCGCCAAGATATG...

Protein

1 records

下载 Protein FASTA
XP_057769676.1
MGEKKEEKVMEGVASLALLPTGSISGHFIQLPNSICYGLHGAELECVRECSHGDDYRLIKLTVTDYNSKRERNVVVECRGHDAAKICTTDHAHGWQKDVVGMLEEKHGKRKISVRFECETLKSDEAAEDHLRKFMPKLVGMDAVVNIGHMTIAGLDFEADAEYERGENDAACADTENCDGSII

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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