当前解析结果
SmilChr06G002933| 统一新 Gene ID | SmilChr06G002933 |
|---|---|
| 名称 | SmilChr06G002933 |
| 描述 | exocyst complex component EXO70E2 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 42170249 - 42173218 / - |
| NCBI Gene ID | LOC130989673 |
|---|---|
| GeneID | 130989673 |
| locus_tag | - |
| NCBI Name | LOC130989673 |
| 原始查询 | LOC130989673 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | exocyst complex component EXO70E2 |
| 产物 | exocyst complex component EXO70E2 |
| Arabidopsis | AT3G29400 (EXO70E1)exocyst subunit exo70 family protein E1 [Source:NCBI gene (formerly Entrezgene);Acc:822601] identity=50.5; qcov=1.01; evalue=0; confidence=high |
| Rice | Os01g0763750 (OsEXO70X1)- identity=42.6; qcov=0.899; evalue=1.43e-153; confidence=medium |
| GO | GO:0000145 (exocyst); GO:0005546 (phosphatidylinositol-4,5-bisphosphate binding); GO:0006887 (exocytosis) |
| KEGG | - |
| Pfam | PF03081 (Exo70_C); PF20669 (Exo70_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989673 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057769705.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057769705.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057769705.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057769705.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057769705.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:42170548 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:42170674 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C62,C82 |
Chr6:42170755 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B46,B82,D7 |
Chr6:42170839 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr6:42170881 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A23 |
Chr6:42170978 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C62 |
Chr6:42171032 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B35,C34 |
Chr6:42171124 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A23 |
Chr6:42171145 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C86 |
Chr6:42171238 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C86 |
Chr6:42171259 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B122,B131,B135,B93 |
Chr6:42171379 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A25,B113,B24,B77,C87 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057769705.1PF20669
Exo70_N 84-167 aa
PF03081
Exo70_C 286-648 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769705.1 |
Pfam | PF20669 |
Exo70_N | Repeat | 84 | 167 | 1.5e-14 | 54.7 | Exocyst complex component Exo70 N-terminal |
XP_057769705.1 |
Pfam | PF03081 |
Exo70_C | Repeat | 286 | 648 | 3.9e-125 | 418.5 | Exo70 exocyst complex subunit C-terminal |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。