Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G002943`

染色体: Chr06 坐标: 42257002-42263339 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G002943`
名称	SmilChr06G002943
描述	transcription factor TCP13-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	42257002 - 42263339 / `+`

ID 对照

NCBI Gene ID	`LOC130989683`
GeneID	`130989683`
locus_tag	`-`
NCBI Name	`LOC130989683`
原始查询	`LOC130989683`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcription factor TCP13-like
产物	transcription factor TCP13-like
Arabidopsis	`AT3G02150` (PTF1) plastid transcription factor 1 [Source:NCBI gene (formerly Entrezgene);Acc:821061] identity=65.3; qcov=0.432; evalue=1.08e-46; confidence=low
Rice	`Os01g0763200` (OsTCP5) - identity=82.8; qcov=0.311; evalue=6.46e-45; confidence=low
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus); GO:0043565 (sequence-specific DNA binding)
KEGG	-
Pfam	PF03634 (TCP)
InterPro	-
eggNOG	-
NR	GeneID:130989683

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057769724.1`
2	Chromosome	染色体	0.00000	`XP_057769724.1`
3	Centromere	着丝粒	0.00000	`XP_057769724.1`
4	Chromatin	染色质	0.00000	`XP_057769724.1`
5	Telomere	端粒	0.00000	`XP_057769724.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:42258341`	`A`	`AG`	1bp_insertion	frameshift_variant	3	B42,B43,C71
`Chr6:42258341`	`A`	`AG`	1bp_insertion	CDS_variant	3	B42,B43,C71
`Chr6:42258385`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr6:42258403`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B136,B80,C13,C14
`Chr6:42258540`	`TC`	`T`	1bp_deletion	frameshift_variant	1	A13
`Chr6:42258540`	`TC`	`T`	1bp_deletion	CDS_variant	1	A13
`Chr6:42258653`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A16,B105,B84,C28
`Chr6:42258661`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B123,B131
`Chr6:42258904`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr6:42258907`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B1,C82
`Chr6:42258964`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769724.1

280 aa

140

280

TCP

PF03634 TCP 60-166 aa

XP_057769725.1

280 aa

140

280

TCP

PF03634 TCP 60-166 aa

XP_057769726.1

280 aa

140

280

TCP

PF03634 TCP 60-166 aa

XP_057769727.1

280 aa

140

280

TCP

PF03634 TCP 60-166 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769724.1`	Pfam	`PF03634`	TCP	Family	60	166	2.6e-31	110.0	TCP family transcription factor
`XP_057769725.1`	Pfam	`PF03634`	TCP	Family	60	166	2.6e-31	110.0	TCP family transcription factor
`XP_057769726.1`	Pfam	`PF03634`	TCP	Family	60	166	2.6e-31	110.0	TCP family transcription factor
`XP_057769727.1`	Pfam	`PF03634`	TCP	Family	60	166	2.6e-31	110.0	TCP family transcription factor

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XR_009090717.1
AGAAAAATATATATAGTAGTGTGGTCCTCTCCATATATATATATATCTTGAAGAAAATTTCAATGGAAATCAGTTGGTCCCTCACACCCCATGGCAACATCAGAGTGACGTTACTCTCACTCTAGAAACTCCAAAAATATAATCCAATTTGAGAGAAGAATTCATGGTCCCATAGATTGGAAATGCACCGGCTTCTTAGCTCGATTAAGAAGGCAAAATTTTGTCTTGGTTTGAGACTTGGATACTATGCAAGTCCAAAG...

XM_057913744.1
CATGCAATAAAATTCATCTATATATACATCCCACAATTCTCTGAATTTATTCTTTTGATAAGCAAGAAAAATATATATAGTAGTGTGGTCCTCTCCATATATATATATATCTTGAAGAAAATTTCAATGGAAATCAGTTGGTCCCTCACACCCCATGGCAACATCAGAGTGACGTTACTCTCACTCTAGAAACTCCAAAAATATAATCCAATTTGAGATTGTGAATTATTTATCAAGTTTTGGGATGAATTGAGTGAGAA...

CDS

4 records

下载 CDS FASTA

LOC130989683
ATGATTTCAAGAGAAATAGCAAAGCAAGAGAGTAGCAGCACAACTGACAATAACAACAACAGCAACAACAACAACAACGACAACAGCAGCAACAACATCAGCAGCTTGAAGGCAGCCACGACATCGTGGTCGAGGCTGAAGGACCCCCGGATAGTACGCGTGTCGAGGGCCTTCGGGGGAAAGGACCGGCACAGCAAGGTGTGCACGGTGAGGGGCCTGAGGGACAGACGCGTGCGGCTGTCCGTCCCCACGGCCATCCA...

Protein

4 records

下载 Protein FASTA

XP_057769724.1
MISREIAKQESSSTTDNNNNSNNNNNDNSSNNISSLKAATTSWSRLKDPRIVRVSRAFGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKAEIDELPPLQFPHPTMLDNLNNQLDLKSKDHQDHHHSYLNQNQNQNQNQNQNPSSSTTSNIPFNSSFVRWDPSTLTLSHPPRSPNCSSSPHQQPAAEDWHNFSLVQPHHHHHHQVLVYQPAAAMAAQPYFQSQISASNADFSPSVEAS...

XP_057769725.1
MISREIAKQESSSTTDNNNNSNNNNNDNSSNNISSLKAATTSWSRLKDPRIVRVSRAFGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKAEIDELPPLQFPHPTMLDNLNNQLDLKSKDHQDHHHSYLNQNQNQNQNQNQNPSSSTTSNIPFNSSFVRWDPSTLTLSHPPRSPNCSSSPHQQPAAEDWHNFSLVQPHHHHHHQVLVYQPAAAMAAQPYFQSQISASNADFSPSVEAS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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