当前解析结果
SmilChr01G003061| 统一新 Gene ID | SmilChr01G003061 |
|---|---|
| 名称 | SmilChr01G003061 |
| 描述 | F-box/kelch-repeat protein At1g51550 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 49493012 - 49495746 / - |
| NCBI Gene ID | LOC130989687 |
|---|---|
| GeneID | 130989687 |
| locus_tag | - |
| NCBI Name | LOC130989687 |
| 原始查询 | LOC130989687 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | F-box/kelch-repeat protein At1g51550 |
| 产物 | F-box/kelch-repeat protein At1g51550 |
| Arabidopsis | AT1G51550 (AT1G51550)Kelch repeat-containing F-box family protein [Source:NCBI gene (formerly Entrezgene);Acc:841580] identity=55.5; qcov=0.871; evalue=3.68e-167; confidence=high |
| Rice | Os08g0230300 (Os_F0765)- identity=51.5; qcov=0.879; evalue=3.73e-158; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00646 (F-box); PF12937 (F-box-like); PF24681 (Kelch_KLHDC2_KLHL20_DRC7) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989687 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057769734.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057769734.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057769734.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057769734.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057769734.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:49493255 |
TA |
T |
1bp_deletion | frameshift_variant | 1 | B59 |
Chr1:49493255 |
TA |
T |
1bp_deletion | CDS_variant | 1 | B59 |
Chr1:49493293 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr1:49493418 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C13 |
Chr1:49493713 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr1:49493848 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr1:49493866 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B51,B94 |
Chr1:49494142 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr1:49494916 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B61,C43 |
Chr1:49495300 |
C |
CT |
1bp_insertion | frameshift_variant | 17 | A14,A15,A6,B105,B112,B113,B118,B123,B124,B3,B74,B84,C14,C40,C8,C83,C85 |
Chr1:49495343 |
TA |
T |
1bp_deletion | frameshift_variant | 61 | A10,A11,A14,A24,A3,B110,B111,B112,B125,B126,B130,B16,B19,B2,B21,B24,B25,B29,B41,B42,B43,B48,B5,B52,B54,B62,B70,B71,B74,B80,B84,B90,B91,B92,B94,B97,B98,C17,C22,C24,C27,C3,C31,C4,C45,C48,C5,C50,C52,C55,C58,C6,C62,C63,C67,C75,C77,C78,C80,C86,D5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057769734.1PF00646
F-box 79-118 aa
PF12937
F-box-like 79-123 aa
PF24681
Kelch_KLHDC2_KLHL20_DRC7 228-439 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769734.1 |
Pfam | PF00646 |
F-box | Domain | 79 | 118 | 2.5e-07 | 31.0 | F-box domain |
XP_057769734.1 |
Pfam | PF12937 |
F-box-like | Domain | 79 | 123 | 5.7e-07 | 29.9 | F-box-like |
XP_057769734.1 |
Pfam | PF24681 |
Kelch_KLHDC2_KLHL20_DRC7 | Repeat | 228 | 439 | 1e-55 | 189.2 | KLHDC2/KLHL20/DRC7 Kelch-repeats domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。