当前解析结果
SmilChr06G002965| 统一新 Gene ID | SmilChr06G002965 |
|---|---|
| 名称 | SmilChr06G002965 |
| 描述 | receptor-like protein kinase FERONIA |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 42432502 - 42436727 / - |
| NCBI Gene ID | LOC130989703 |
|---|---|
| GeneID | 130989703 |
| locus_tag | - |
| NCBI Name | LOC130989703 |
| 原始查询 | LOC130989703 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor-like protein kinase FERONIA |
| 产物 | receptor-like protein kinase FERONIA |
| Arabidopsis | AT5G39000 (AT5G39000)Malectin/receptor-like protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:833892] identity=38.8; qcov=0.615; evalue=1.1e-111; confidence=medium |
| Rice | Os01g0769700 (DRUS2)- identity=41.5; qcov=0.575; evalue=2.33e-110; confidence=medium |
| GO | GO:0004714 (transmembrane receptor protein tyrosine kinase activity); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0009506 (plasmodesma); GO:0046777 (protein autophosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF12819 (Malectin_like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989703 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057769753.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057769753.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057769753.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057769753.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057769753.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:42432837 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr6:42432857 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B3,C28,C61,D7 |
Chr6:42432881 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B108,C18,C28,C61,D7 |
Chr6:42432885 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr6:42433027 |
TC |
T |
1bp_deletion | frameshift_variant | 2 | C39,C46 |
Chr6:42433027 |
TC |
T |
1bp_deletion | CDS_variant | 2 | C39,C46 |
Chr6:42433046 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | B83 |
Chr6:42433046 |
AT |
A |
1bp_deletion | CDS_variant | 1 | B83 |
Chr6:42433068 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:42433140 |
GGT |
G |
2bp_deletion | frameshift_variant | 2 | B93,C40 |
Chr6:42433140 |
GGT |
G |
2bp_deletion | CDS_variant | 2 | B93,C40 |
Chr6:42433143 |
C |
CAG |
2bp_insertion | frameshift_variant | 2 | B93,C40 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057769753.1PF12819
Malectin_like 44-343 aa
PF00069
Pkinase 473-742 aa
PF07714
PK_Tyr_Ser-Thr 473-745 aa
PF00069
Pkinase 887-1140 aa
PF07714
PK_Tyr_Ser-Thr 895-1141 aa
XP_057769754.1PF12819
Malectin_like 17-316 aa
PF00069
Pkinase 446-715 aa
PF07714
PK_Tyr_Ser-Thr 446-718 aa
PF00069
Pkinase 860-1113 aa
PF07714
PK_Tyr_Ser-Thr 868-1114 aa
XP_057769755.1PF00069
Pkinase 231-500 aa
PF07714
PK_Tyr_Ser-Thr 231-503 aa
PF00069
Pkinase 645-898 aa
PF07714
PK_Tyr_Ser-Thr 653-899 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769753.1 |
Pfam | PF12819 |
Malectin_like | Domain | 44 | 343 | 7.7e-09 | 36.0 | Malectin-like domain |
XP_057769753.1 |
Pfam | PF00069 |
Pkinase | Domain | 473 | 742 | 3.4e-78 | 263.4 | Protein kinase domain |
XP_057769753.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 473 | 745 | 1.2e-87 | 294.3 | Protein tyrosine and serine/threonine kinase |
XP_057769753.1 |
Pfam | PF00069 |
Pkinase | Domain | 887 | 1140 | 3.4e-78 | 263.4 | Protein kinase domain |
XP_057769753.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 895 | 1141 | 1.2e-87 | 294.3 | Protein tyrosine and serine/threonine kinase |
XP_057769754.1 |
Pfam | PF12819 |
Malectin_like | Domain | 17 | 316 | 7.2e-09 | 36.1 | Malectin-like domain |
XP_057769754.1 |
Pfam | PF00069 |
Pkinase | Domain | 446 | 715 | 3.2e-78 | 263.5 | Protein kinase domain |
XP_057769754.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 446 | 718 | 1.1e-87 | 294.4 | Protein tyrosine and serine/threonine kinase |
XP_057769754.1 |
Pfam | PF00069 |
Pkinase | Domain | 860 | 1113 | 3.2e-78 | 263.5 | Protein kinase domain |
XP_057769754.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 868 | 1114 | 1.1e-87 | 294.4 | Protein tyrosine and serine/threonine kinase |
XP_057769755.1 |
Pfam | PF00069 |
Pkinase | Domain | 231 | 500 | 1.5e-78 | 264.5 | Protein kinase domain |
XP_057769755.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 231 | 503 | 4.7e-88 | 295.5 | Protein tyrosine and serine/threonine kinase |
XP_057769755.1 |
Pfam | PF00069 |
Pkinase | Domain | 645 | 898 | 1.5e-78 | 264.5 | Protein kinase domain |
XP_057769755.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 653 | 899 | 4.7e-88 | 295.5 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。