Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及有 accession 序列支持的文献基因名查询；未闭环名称仅提供候选导航。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G003012`

染色体: Chr06 坐标: 42995672-42999285 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G003012`
名称	SmilChr06G003012
描述	E3 ubiquitin-protein ligase At3g02290-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	42995672 - 42999285 / `+`

ID 对照

NCBI Gene ID	`LOC130989745`
GeneID	`130989745`
locus_tag	`-`
NCBI Name	`LOC130989745`
原始查询	`LOC130989745`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	E3 ubiquitin-protein ligase At3g02290-like
产物	E3 ubiquitin-protein ligase At3g02290-like
Arabidopsis	`AT5G38895` (AT5G38895) RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:833881] identity=51.54; qcov=0.991; evalue=4.18e-80; confidence=high
Rice	`Os01g0926200` (OsRFP) - identity=49.57; qcov=0.996; evalue=1.82e-66; confidence=high
GO	GO:0004842 (ubiquitin-protein transferase activity)
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF12678 (zf-rbx1); PF12861 (zf-ANAPC11); PF13445 (zf-RING_UBOX); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2)
InterPro	-
eggNOG	-
NR	GeneID:130989745

打开注释模块

非零投票定位候选（最多五项）

Rank	定位位置	中文	五折投票比例	Protein ID
1	Cytoplasm	细胞质	0.40000	`XP_057769812.1`
2	Cytosol	细胞质基质	0.20000	`XP_057769812.1`
3	Cell membrane	细胞膜	0.20000	`XP_057769812.1`
4	Endoplasmic reticulum	内质网	0.20000	`XP_057769812.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:42997247`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B111,B75,B92
`Chr6:42997708`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr6:42997839`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr6:42998018`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B71,C83,C85
`Chr6:42998534`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr6:42998999`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C25
`Chr6:42999015`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B13

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769812.1

228 aa

114

228

zf-rbx1

zf-RING_2

zf-ANAPC11

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

PF12678 zf-rbx1 175-218 aa PF13639 zf-RING_2 177-218 aa PF12861 zf-ANAPC11 177-225 aa PF13445 zf-RING_UBOX 178-216 aa PF00097 zf-C3HC4 178-218 aa PF13923 zf-C3HC4_2 178-218 aa

XP_057769813.1

228 aa

114

228

zf-rbx1

zf-RING_2

zf-ANAPC11

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

PF12678 zf-rbx1 175-218 aa PF13639 zf-RING_2 177-218 aa PF12861 zf-ANAPC11 177-225 aa PF13445 zf-RING_UBOX 178-216 aa PF00097 zf-C3HC4 178-218 aa PF13923 zf-C3HC4_2 178-218 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769812.1`	Pfam	`PF12678`	zf-rbx1	Domain	175	218	8.1e-11	42.7	RING-H2 zinc finger domain
`XP_057769812.1`	Pfam	`PF13639`	zf-RING_2	Domain	177	218	2.9e-11	44.1	Ring finger domain
`XP_057769812.1`	Pfam	`PF12861`	zf-ANAPC11	Domain	177	225	1.4e-06	28.9	Anaphase-promoting complex subunit 11 RING-H2 finger
`XP_057769812.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	178	216	8.6e-06	26.4	RING-type zinc-finger
`XP_057769812.1`	Pfam	`PF00097`	zf-C3HC4	Domain	178	218	1e-06	29.2	Zinc finger, C3HC4 type (RING finger)
`XP_057769812.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	178	218	2.8e-07	30.9	Zinc finger, C3HC4 type (RING finger)
`XP_057769813.1`	Pfam	`PF12678`	zf-rbx1	Domain	175	218	8.1e-11	42.7	RING-H2 zinc finger domain
`XP_057769813.1`	Pfam	`PF13639`	zf-RING_2	Domain	177	218	2.9e-11	44.1	Ring finger domain
`XP_057769813.1`	Pfam	`PF12861`	zf-ANAPC11	Domain	177	225	1.4e-06	28.9	Anaphase-promoting complex subunit 11 RING-H2 finger
`XP_057769813.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	178	216	8.6e-06	26.4	RING-type zinc-finger
`XP_057769813.1`	Pfam	`PF00097`	zf-C3HC4	Domain	178	218	1e-06	29.2	Zinc finger, C3HC4 type (RING finger)
`XP_057769813.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	178	218	2.8e-07	30.9	Zinc finger, C3HC4 type (RING finger)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057913829.1
AAAAATGATTAGTGTTTAACCACCGTAGTCGTATTTAGAATTGGGAGTTGCAGATTCAAGCTTAGTGAGTGACTGAAACATAATCTCTTGAGAAAATCCACCCCATTAAACCTGAAATAAAGAGAAAAAGATTTCAAATGTGTTCCAGAAATTATGCAGAAGTCGGGCTTCCATTCCAAGACATCGACGGAGAGATTCCCGCCGAAATCGGAATCTGCAGGTTCTCGGGCTTCCCCGCACCATCGAAAGGCTTCAGAAGC...

XM_057913830.1
CATCTTGCCTCGTATATTCTCGTGTTTTTTGTTCTTTCAATTTTTTATTATATTTTGTTATCCGTTTCTCTTAACTGCTATTTGCTGGGCTAGAAGGGAGTTAGAGGTTGTTTGAGGTCTCCCCCTATAAGAAAAAGGCATTTGGGTGTTTTTTACTTGTGGGGAGAGGCTGCTGGTTCGCGAAGCCAGCTCAACTTCTGCGAGCTTGGGGACCTCTCTCGTAGTACATTTTGGGTGGTGGGTGTTAAATTTTTTGATAT...

CDS

2 records

下载 CDS FASTA

LOC130989745
ATGGGTGCTGCTTGTTGCTGTTTGAGGGATGAATTTGAGGATCTTGCTAATCCAAACAACCCAATGTACAGCAACTGCATATGCCTTCGTTGCTTCCTTCAGAATTTTGTGCATATGTATGCATCTCTGTTTGATAGAGGGGAAGAGCATGCCTTATCCTCATCCACTCAGGGAGCATCATCTTTAAATCCTATGGTATCTCTTGATAATTCCCTAGCTGAGATGTACCGCTCTCCTCCAAGACCTCTTCCCTATGATGC...

Protein

2 records

下载 Protein FASTA

XP_057769812.1
MGAACCCLRDEFEDLANPNNPMYSNCICLRCFLQNFVHMYASLFDRGEEHALSSSTQGASSLNPMVSLDNSLAEMYRSPPRPLPYDADPRSFRLQQLDRLVSRREKGSGHSHDESEPLRTSGADEQSELLSNKNKWNEFACEEGSKDYNSRLSFKLSNSKMATGFAHIYASPEEEDVCPTCLEEYTTENPKIITECSHHYHLGCIYEWMERSDKCPVCGKVMAFNETT

XP_057769813.1
MGAACCCLRDEFEDLANPNNPMYSNCICLRCFLQNFVHMYASLFDRGEEHALSSSTQGASSLNPMVSLDNSLAEMYRSPPRPLPYDADPRSFRLQQLDRLVSRREKGSGHSHDESEPLRTSGADEQSELLSNKNKWNEFACEEGSKDYNSRLSFKLSNSKMATGFAHIYASPEEEDVCPTCLEEYTTENPKIITECSHHYHLGCIYEWMERSDKCPVCGKVMAFNETT

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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