Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G003016`

染色体: Chr06 坐标: 43012906-43017018 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G003016`
名称	SmilChr06G003016
描述	ultraviolet-B receptor UVR8
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	43012906 - 43017018 / `+`

ID 对照

NCBI Gene ID	`LOC130989749`
GeneID	`130989749`
locus_tag	`-`
NCBI Name	`LOC130989749`
原始查询	`LOC130989749`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ultraviolet-B receptor UVR8
产物	ultraviolet-B receptor UVR8
Arabidopsis	`AT3G02300` (AT3G02300) Regulator of chromosome condensation (RCC1) family protein [Source:NCBI gene (formerly Entrezgene);Acc:821167] identity=76.6; qcov=1.01; evalue=0; confidence=high
Rice	`Os03g0599600` - identity=72.6; qcov=0.319; evalue=6.62e-72; confidence=low
GO	-
KEGG	-
Pfam	PF00415 (RCC1); PF13540 (RCC1_2); PF25390 (WD40_RLD)
InterPro	-
eggNOG	-
NR	GeneID:130989749

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057769818.1`
2	Cytoplasm	细胞质	1.00000	`XP_057769819.1`
3	Nucleus	细胞核	0.00000	`XP_057769818.1`
4	Chromosome	染色体	0.00000	`XP_057769818.1`
5	Centromere	着丝粒	0.00000	`XP_057769818.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:43013274`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B32,D10
`Chr6:43013288`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr6:43014174`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr6:43014220`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr6:43015452`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B108,B78,C82,C87,D5
`Chr6:43015465`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr6:43016012`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr6:43016018`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B140,B26
`Chr6:43016026`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr6:43016037`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B53
`Chr6:43016218`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr6:43016293`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B102,B4,B62,B73,C31

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769818.1

465 aa

232

465

RCC1

RCC1_2

RCC1

WD40_RLD

RCC1_2

RCC1

RCC1_2

RCC1

RCC1_2

RCC1

RCC1_2

RCC1

PF00415 RCC1 21-75 aa PF13540 RCC1_2 65-92 aa PF00415 RCC1 79-128 aa PF25390 WD40_RLD 166-412 aa PF13540 RCC1_2 168-197 aa PF00415 RCC1 184-242 aa PF13540 RCC1_2 229-258 aa PF00415 RCC1 245-297 aa PF13540 RCC1_2 284-313 aa PF00415 RCC1 300-358 aa PF13540 RCC1_2 346-375 aa PF00415 RCC1 362-410 aa

XP_057769819.1

458 aa

229

458

RCC1

RCC1_2

RCC1

WD40_RLD

RCC1_2

RCC1

RCC1_2

RCC1

RCC1_2

RCC1

RCC1_2

PF00415 RCC1 21-75 aa PF13540 RCC1_2 65-92 aa PF00415 RCC1 79-128 aa PF25390 WD40_RLD 166-405 aa PF13540 RCC1_2 168-197 aa PF00415 RCC1 184-242 aa PF13540 RCC1_2 229-258 aa PF00415 RCC1 245-297 aa PF13540 RCC1_2 284-313 aa PF00415 RCC1 300-358 aa PF13540 RCC1_2 346-375 aa

XP_057769820.1

458 aa

229

458

RCC1

RCC1_2

RCC1

WD40_RLD

RCC1_2

RCC1

RCC1_2

RCC1

RCC1_2

RCC1

RCC1_2

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769818.1`	Pfam	`PF00415`	RCC1	Repeat	21	75	1.2e-64	215.4	Regulator of chromosome condensation (RCC1) repeat
`XP_057769818.1`	Pfam	`PF13540`	RCC1_2	Repeat	65	92	1.3e-49	165.5	Regulator of chromosome condensation (RCC1) repeat
`XP_057769818.1`	Pfam	`PF00415`	RCC1	Repeat	79	128	1.2e-64	215.4	Regulator of chromosome condensation (RCC1) repeat
`XP_057769818.1`	Pfam	`PF25390`	WD40_RLD	Repeat	166	412	4.2e-79	267.2	RCC1-like domain
`XP_057769818.1`	Pfam	`PF13540`	RCC1_2	Repeat	168	197	1.3e-49	165.5	Regulator of chromosome condensation (RCC1) repeat
`XP_057769818.1`	Pfam	`PF00415`	RCC1	Repeat	184	242	1.2e-64	215.4	Regulator of chromosome condensation (RCC1) repeat
`XP_057769818.1`	Pfam	`PF13540`	RCC1_2	Repeat	229	258	1.3e-49	165.5	Regulator of chromosome condensation (RCC1) repeat
`XP_057769818.1`	Pfam	`PF00415`	RCC1	Repeat	245	297	1.2e-64	215.4	Regulator of chromosome condensation (RCC1) repeat
`XP_057769818.1`	Pfam	`PF13540`	RCC1_2	Repeat	284	313	1.3e-49	165.5	Regulator of chromosome condensation (RCC1) repeat
`XP_057769818.1`	Pfam	`PF00415`	RCC1	Repeat	300	358	1.2e-64	215.4	Regulator of chromosome condensation (RCC1) repeat
`XP_057769818.1`	Pfam	`PF13540`	RCC1_2	Repeat	346	375	1.3e-49	165.5	Regulator of chromosome condensation (RCC1) repeat
`XP_057769818.1`	Pfam	`PF00415`	RCC1	Repeat	362	410	1.2e-64	215.4	Regulator of chromosome condensation (RCC1) repeat
`XP_057769819.1`	Pfam	`PF00415`	RCC1	Repeat	21	75	9.8e-59	196.5	Regulator of chromosome condensation (RCC1) repeat
`XP_057769819.1`	Pfam	`PF13540`	RCC1_2	Repeat	65	92	1.1e-49	165.7	Regulator of chromosome condensation (RCC1) repeat
`XP_057769819.1`	Pfam	`PF00415`	RCC1	Repeat	79	128	9.8e-59	196.5	Regulator of chromosome condensation (RCC1) repeat
`XP_057769819.1`	Pfam	`PF25390`	WD40_RLD	Repeat	166	405	4.6e-76	257.2	RCC1-like domain
`XP_057769819.1`	Pfam	`PF13540`	RCC1_2	Repeat	168	197	1.1e-49	165.7	Regulator of chromosome condensation (RCC1) repeat
`XP_057769819.1`	Pfam	`PF00415`	RCC1	Repeat	184	242	9.8e-59	196.5	Regulator of chromosome condensation (RCC1) repeat
`XP_057769819.1`	Pfam	`PF13540`	RCC1_2	Repeat	229	258	1.1e-49	165.7	Regulator of chromosome condensation (RCC1) repeat
`XP_057769819.1`	Pfam	`PF00415`	RCC1	Repeat	245	297	9.8e-59	196.5	Regulator of chromosome condensation (RCC1) repeat
`XP_057769819.1`	Pfam	`PF13540`	RCC1_2	Repeat	284	313	1.1e-49	165.7	Regulator of chromosome condensation (RCC1) repeat
`XP_057769819.1`	Pfam	`PF00415`	RCC1	Repeat	300	358	9.8e-59	196.5	Regulator of chromosome condensation (RCC1) repeat
`XP_057769819.1`	Pfam	`PF13540`	RCC1_2	Repeat	346	375	1.1e-49	165.7	Regulator of chromosome condensation (RCC1) repeat
`XP_057769820.1`	Pfam	`PF00415`	RCC1	Repeat	21	75	9.8e-59	196.5	Regulator of chromosome condensation (RCC1) repeat
`XP_057769820.1`	Pfam	`PF13540`	RCC1_2	Repeat	65	92	1.1e-49	165.7	Regulator of chromosome condensation (RCC1) repeat
`XP_057769820.1`	Pfam	`PF00415`	RCC1	Repeat	79	128	9.8e-59	196.5	Regulator of chromosome condensation (RCC1) repeat
`XP_057769820.1`	Pfam	`PF25390`	WD40_RLD	Repeat	166	405	4.6e-76	257.2	RCC1-like domain
`XP_057769820.1`	Pfam	`PF13540`	RCC1_2	Repeat	168	197	1.1e-49	165.7	Regulator of chromosome condensation (RCC1) repeat
`XP_057769820.1`	Pfam	`PF00415`	RCC1	Repeat	184	242	9.8e-59	196.5	Regulator of chromosome condensation (RCC1) repeat
`XP_057769820.1`	Pfam	`PF13540`	RCC1_2	Repeat	229	258	1.1e-49	165.7	Regulator of chromosome condensation (RCC1) repeat
`XP_057769820.1`	Pfam	`PF00415`	RCC1	Repeat	245	297	9.8e-59	196.5	Regulator of chromosome condensation (RCC1) repeat
`XP_057769820.1`	Pfam	`PF13540`	RCC1_2	Repeat	284	313	1.1e-49	165.7	Regulator of chromosome condensation (RCC1) repeat
`XP_057769820.1`	Pfam	`PF00415`	RCC1	Repeat	300	358	9.8e-59	196.5	Regulator of chromosome condensation (RCC1) repeat
`XP_057769820.1`	Pfam	`PF13540`	RCC1_2	Repeat	346	375	1.1e-49	165.7	Regulator of chromosome condensation (RCC1) repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057913835.1
AAGAAAGCTATAAATCTGGCGTTGGAAAATAATCGGTGGAGCGGGCAGCTCGGGCAGGAATCTGGAATCACGTACGGGCAGCCCGCCCCCTTCTTTCGCCATCTTCATCGGAACGCCGACACATATTTTGCCTCGAAAATCAACTTCAATTCTTCCTAAGGTTATCCCCAATTTGATAAGCCGAAATGGAGATCGACGAGATATTGGGGGAATCGAAACTGGCCAAGATTCCGACCAAGAGCGTCATATACGCTTGGGGC...

XM_057913836.1
AAAGCTATAAATCTGGCGTTGGAAAATAATCGGTGGAGCGGGCAGCTCGGGCAGGAATCTGGAATCACGTACGGGCAGCCCGCCCCCTTCTTTCGCCATCTTCATCGGAACGCCGACACATATTTTGCCTCGAAAATCAACTTCAATTCTTCCTAAGGTTATCCCCAATTTGATAAGCCGAAATGGAGATCGACGAGATATTGGGGGAATCGAAACTGGCCAAGATTCCGACCAAGAGCGTCATATACGCTTGGGGCTAC...

CDS

3 records

下载 CDS FASTA

LOC130989749
ATGGAGATCGACGAGATATTGGGGGAATCGAAACTGGCCAAGATTCCGACCAAGAGCGTCATATACGCTTGGGGCTACAATCAGTCGGGCCAAACGGGCCGGGCGGAGGAAGAAGGGAATTTGCGGATTCCGCGGCAGCTGCCGATGGACCTCTTCGGCTGCCCGGCCGGCGGCGGAAACTCTCGGTGGCTTGATATCGCTTGCGGTCGCGAGCACACTGCCAGCGTCGCCTCCGACGGCTCACTTTTCACGTGGGGGGC...

Protein

3 records

下载 Protein FASTA

XP_057769818.1
MEIDEILGESKLAKIPTKSVIYAWGYNQSGQTGRAEEEGNLRIPRQLPMDLFGCPAGGGNSRWLDIACGREHTASVASDGSLFTWGANEYGQLGDGTERGRKYPMKVKHLQSEFAISVSCGAHCTAAIAEPRENDGSMSTRRLWVWGQNQGSNCPRLFWGAFAPDTVVRQVSCGAVHVVALSEDGLLQAWGYNVYGQLGRGITSEGLQGARLIKGYARFLDEAPELVKIIQVSCGEYHTAAISDSGEVYTWGLGSMGQLG...

XP_057769819.1
MEIDEILGESKLAKIPTKSVIYAWGYNQSGQTGRAEEEGNLRIPRQLPMDLFGCPAGGGNSRWLDIACGREHTASVASDGSLFTWGANEYGQLGDGTERGRKYPMKVKHLQSEFAISVSCGAHCTAAIAEPRENDGSMSTRRLWVWGQNQGSNCPRLFWGAFAPDTVVRQVSCGAVHVVALSEDGLLQAWGYNVYGQLGRGITSEGLQGARLIKGYARFLDEAPELVKIIQVSCGEYHTAAISDSGEVYTWGLGSMGQLG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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