Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G003022

染色体: Chr06 坐标: 43078117-43082287 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G003022
名称SmilChr06G003022
描述nuclear envelope-associated protein 2-like
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向43078117 - 43082287 / +

ID 对照

NCBI Gene IDLOC130989756
GeneID130989756
locus_tag-
NCBI NameLOC130989756
原始查询LOC130989756

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述nuclear envelope-associated protein 2-like
产物nuclear envelope-associated protein 2-like
ArabidopsisAT5G26770 (AT5G26770)
myosin heavy chain, cardiac protein [Source:NCBI gene (formerly Entrezgene);Acc:832735]
identity=64.1; qcov=0.971; evalue=3.19e-144; confidence=high
RiceOs05g0135900
-
identity=62.7; qcov=0.973; evalue=3.28e-128; confidence=high
GO-
KEGG-
PfamPF28496 (NEAP)
InterPro-
eggNOG-
NRGeneID:130989756

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus membrane 核膜 0.40000 XP_057769832.1
2 Golgi apparatus 高尔基体 0.40000 XP_057769832.1
3 Cytoplasm 细胞质 0.20000 XP_057769832.1
4 Lipid droplet 脂滴 0.20000 XP_057769832.1
5 Nucleus 细胞核 0.00000 XP_057769832.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr6:43079307 G A EMS_canonical_SNV CDS_variant 2 A10,B65
Chr6:43081028 G A EMS_canonical_SNV CDS_variant 1 C16
Chr6:43081121 G A EMS_canonical_SNV CDS_variant 2 A10,B65
Chr6:43081856 C T EMS_canonical_SNV CDS_variant 1 B26
Chr6:43081874 C T EMS_canonical_SNV CDS_variant 2 B107,C15
Chr6:43081888 C T EMS_canonical_SNV CDS_variant 2 B140,C87
Chr6:43081906 G A EMS_canonical_SNV CDS_variant 2 B140,C87

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057769832.1
339 aa
N
1
170
339
NEAP
C
PF28496 NEAP 235-339 aa
XP_057769833.1
339 aa
N
1
170
339
NEAP
C
PF28496 NEAP 235-339 aa
XP_057769835.1
339 aa
N
1
170
339
NEAP
C
PF28496 NEAP 235-339 aa
XP_057769836.1
339 aa
N
1
170
339
NEAP
C
PF28496 NEAP 235-339 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057769832.1 Pfam PF28496 NEAP Domain 235 339 4e-49 165.6 Nuclear envelope-associated protein
XP_057769833.1 Pfam PF28496 NEAP Domain 235 339 4e-49 165.6 Nuclear envelope-associated protein
XP_057769835.1 Pfam PF28496 NEAP Domain 235 339 4e-49 165.6 Nuclear envelope-associated protein
XP_057769836.1 Pfam PF28496 NEAP Domain 235 339 4e-49 165.6 Nuclear envelope-associated protein

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057913852.1
AATCAATAACTCTTTGATAGATAAACATTAATCACTCGCAAGTCGCAACAATAAATACATTACTTCTTTAGAAAGCATAGAACGATTATCTAAATGGAAAGAAACGTTTAAAAATGAAAAATTTCACAAATCTAGCAGACGTGCAGGCAACAACCTTAAGTTTATGTTGTTAACCATTCTACTAACTAAAAACAGATCCGAATTTAGACCTAAGATCATTAACATAATCGCGCAATTATCATTAATTAATTTACGTTAAT...
XM_057913850.1
AATCAATAACTCTTTGATAGATAAACATTAATCACTCGCAAGTCGCAACAATAAATACATTACTTCTTTAGAAAGCATAGAACGATTATCTAAATGGAAAGAAACGTTTAAAAATGAAAAATTTCACAAATCTAGCAGACGTGCAGGCAACAACCTTAAGTTTATGTTGTTAACCATTCTACTAACTAAAAACAGATCCGAATTTAGACCTAAGATCATTAACATAATCGCGCAATTATCATTAATTAATTTACGTTAAT...

CDS

4 records

下载 CDS FASTA
LOC130989756
ATGTCTGCGCAGCCGGTGGTGATGCGGGATGTAGATCCGTTGCTCAAGGATCTGAGCGAGAAGAAGCAGAGTTTCCGGCGTAACGTGGTGTCGCTGGCGGCGGAGCTCAAGGAGGTGCGCAGCCGCCTCGCTTCTCAGGAGCAGTCCGTCGTCAGAGAAACCCTAACAAGACAGGAAGCAGAAACTAAATTGAAGAACTTGGAAAAAGAAATTTGTCGGTTGGAGAAGAGTTTAGAGGAGAGGAATGCGGAGCTAGAGGC...
LOC130989756
ATGTCTGCGCAGCCGGTGGTGATGCGGGATGTAGATCCGTTGCTCAAGGATCTGAGCGAGAAGAAGCAGAGTTTCCGGCGTAACGTGGTGTCGCTGGCGGCGGAGCTCAAGGAGGTGCGCAGCCGCCTCGCTTCTCAGGAGCAGTCCGTCGTCAGAGAAACCCTAACAAGACAGGAAGCAGAAACTAAATTGAAGAACTTGGAAAAAGAAATTTGTCGGTTGGAGAAGAGTTTAGAGGAGAGGAATGCGGAGCTAGAGGC...

Protein

4 records

下载 Protein FASTA
XP_057769832.1
MSAQPVVMRDVDPLLKDLSEKKQSFRRNVVSLAAELKEVRSRLASQEQSVVRETLTRQEAETKLKNLEKEICRLEKSLEERNAELEASNTAAEMYVKEMDDLRLQLSLTRATADASALSAQSAQMQCSALVKELEEKNCSLKEHEARVDKLKEQLDLLQKDLLAREVSQMQLKDEVSKIEHEIMQALTKAGADKDCELWKILVETSPKNFKSINNLLTVKDQEIAKLRDEIRFLSAHWKLKTEELESQLEKHRRADLELK...
XP_057769833.1
MSAQPVVMRDVDPLLKDLSEKKQSFRRNVVSLAAELKEVRSRLASQEQSVVRETLTRQEAETKLKNLEKEICRLEKSLEERNAELEASNTAAEMYVKEMDDLRLQLSLTRATADASALSAQSAQMQCSALVKELEEKNCSLKEHEARVDKLKEQLDLLQKDLLAREVSQMQLKDEVSKIEHEIMQALTKAGADKDCELWKILVETSPKNFKSINNLLTVKDQEIAKLRDEIRFLSAHWKLKTEELESQLEKHRRADLELK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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