当前解析结果
SmilChr06G003022| 统一新 Gene ID | SmilChr06G003022 |
|---|---|
| 名称 | SmilChr06G003022 |
| 描述 | nuclear envelope-associated protein 2-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 43078117 - 43082287 / + |
| NCBI Gene ID | LOC130989756 |
|---|---|
| GeneID | 130989756 |
| locus_tag | - |
| NCBI Name | LOC130989756 |
| 原始查询 | LOC130989756 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | nuclear envelope-associated protein 2-like |
| 产物 | nuclear envelope-associated protein 2-like |
| Arabidopsis | AT5G26770 (AT5G26770)myosin heavy chain, cardiac protein [Source:NCBI gene (formerly Entrezgene);Acc:832735] identity=64.1; qcov=0.971; evalue=3.19e-144; confidence=high |
| Rice | Os05g0135900- identity=62.7; qcov=0.973; evalue=3.28e-128; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF28496 (NEAP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989756 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus membrane | 核膜 | 0.40000 | XP_057769832.1 |
| 2 | Golgi apparatus | 高尔基体 | 0.40000 | XP_057769832.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057769832.1 |
| 4 | Lipid droplet | 脂滴 | 0.20000 | XP_057769832.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057769832.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:43079307 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A10,B65 |
Chr6:43081028 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C16 |
Chr6:43081121 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A10,B65 |
Chr6:43081856 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B26 |
Chr6:43081874 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B107,C15 |
Chr6:43081888 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B140,C87 |
Chr6:43081906 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B140,C87 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057769832.1PF28496
NEAP 235-339 aa
XP_057769833.1PF28496
NEAP 235-339 aa
XP_057769835.1PF28496
NEAP 235-339 aa
XP_057769836.1PF28496
NEAP 235-339 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769832.1 |
Pfam | PF28496 |
NEAP | Domain | 235 | 339 | 4e-49 | 165.6 | Nuclear envelope-associated protein |
XP_057769833.1 |
Pfam | PF28496 |
NEAP | Domain | 235 | 339 | 4e-49 | 165.6 | Nuclear envelope-associated protein |
XP_057769835.1 |
Pfam | PF28496 |
NEAP | Domain | 235 | 339 | 4e-49 | 165.6 | Nuclear envelope-associated protein |
XP_057769836.1 |
Pfam | PF28496 |
NEAP | Domain | 235 | 339 | 4e-49 | 165.6 | Nuclear envelope-associated protein |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。