Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G003031`

染色体: Chr06 坐标: 43134381-43140020 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G003031`
名称	SmilChr06G003031
描述	tRNA (guanine(26)-N(2))-dimethyltransferase 2-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	43134381 - 43140020 / `+`

ID 对照

NCBI Gene ID	`LOC130989764`
GeneID	`130989764`
locus_tag	`-`
NCBI Name	`LOC130989764`
原始查询	`LOC130989764`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	tRNA (guanine(26)-N(2))-dimethyltransferase 2-like
产物	tRNA (guanine(26)-N(2))-dimethyltransferase 2-like
Arabidopsis	`AT3G02320` (AT3G02320) N2,N2-dimethylguanosine tRNA methyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:820451] identity=74.8; qcov=0.924; evalue=0; confidence=high
Rice	`Os03g0786700` - identity=66.2; qcov=0.976; evalue=0; confidence=high
GO	GO:0002940 (tRNA N2-guanine methylation); GO:0003723 (RNA binding); GO:0004809 (GO:0004809); GO:0005634 (nucleus)
KEGG	-
Pfam	PF02005 (TRM)
InterPro	-
eggNOG	-
NR	GeneID:130989764

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057769845.1`
2	Nucleolus	核仁	0.60000	`XP_057769846.1`
3	Nucleoplasm	核质	0.60000	`XP_057769846.1`
4	Chromosome	染色体	0.00000	`XP_057769845.1`
5	Centromere	着丝粒	0.00000	`XP_057769845.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:43134788`	`A`	`ATT`	2bp_insertion	frameshift_variant	1	B43
`Chr6:43134788`	`A`	`ATT`	2bp_insertion	CDS_variant	1	B43
`Chr6:43134795`	`C`	`CA`	1bp_insertion	frameshift_variant	1	B43
`Chr6:43134795`	`C`	`CA`	1bp_insertion	CDS_variant	1	B43
`Chr6:43134817`	`C`	`CG`	1bp_insertion	frameshift_variant	1	B43
`Chr6:43134817`	`C`	`CG`	1bp_insertion	CDS_variant	1	B43
`Chr6:43134851`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B43
`Chr6:43134854`	`GGA`	`G`	2bp_deletion	frameshift_variant	1	B43
`Chr6:43134854`	`GGA`	`G`	2bp_deletion	CDS_variant	1	B43
`Chr6:43135518`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C26,C45,D2
`Chr6:43137081`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr6:43139589`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C87,D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769845.1

595 aa

298

595

TRM

PF02005 TRM 32-488 aa

XP_057769846.1

593 aa

296

593

TRM

PF02005 TRM 32-488 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769845.1`	Pfam	`PF02005`	TRM	Family	32	488	4.1e-119	398.9	N2,N2-dimethylguanosine tRNA methyltransferase
`XP_057769846.1`	Pfam	`PF02005`	TRM	Family	32	488	4e-119	398.9	N2,N2-dimethylguanosine tRNA methyltransferase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057913862.1
ATTTTTATTATTTTAAAATATAGTACCAACATTTTTACCATAATTGGCATTAAAAAAGAAAATCCTTGGAGAAGTAGTGACGTTAGTGGGCAGTTGAGAGTCTTCCTCTTTCAAAACCCTTGTTTTCTCACTCTTAATTCTTCGTAAACGAAATCCTCATCCCTGTTTGTCCGCACACATCACGCACCATCGCAGAAGTCTCAGGTTTTCGCTTCGGCCATTCCTCCGCAGCTGCCATAGCCACTGCGAAGAGTCTGCTC...

XM_057913863.1
ACCATAATTGGCATTAAAAAAGAAAATCCTTGGAGAAGTAGTGACGTTAGTGGGCAGTTGAGAGTCTTCCTCTTTCAAAACCCTTGTTTTCTCACTCTTAATTCTTCGTAAACGAAATCCTCATCCCTGTTTGTCCGCACACATCACGCACCATCGCAGAAGTCTCAGGTTTTCGCTTCGGCCATTCCTCCGCAGCTGCCATAGCCACTGCGAAGAGTCTGCTCAAGTTATGTCTGCTTCCGATGAAAAAATTGGAGACG...

CDS

2 records

下载 CDS FASTA

LOC130989764
ATGTCTGCTTCCGATGAAAAAATTGGAGACGAAGAGAAGCACCATACGGGTGCGCCGGAAGCAGCTTCGTCCGATATCAATGATTACAAAGTGATCAAGGAAGGGGAGGCTGAGATTCTAATGCGCGTTGAAAATGAAGTCTTTTATAACAAGGCTCAGGTTAATAACAGAGACATGTCTCTTGCCGTTTTGAGGACATTTATATCAAAACGCCAGCAAGAACATGAAGCTAGGCTGCTTTCCAGGAAAATGAAAAGTAG...

Protein

2 records

下载 Protein FASTA

XP_057769845.1
MSASDEKIGDEEKHHTGAPEAASSDINDYKVIKEGEAEILMRVENEVFYNKAQVNNRDMSLAVLRTFISKRQQEHEARLLSRKMKSRAKEVAEPIVESKSVEHDEKSNGECDVPQDISQDEPCSILENAATNQGGKVPEELKPARVLEALSASGLRALRYAREVEGIEKVVALDNDKASVESCRRNIKLNGSVASSKVESHLADARVYMLTHPKEFDVVDLDPYGSPSVFLDSAVQSVVDGGILMCTATDMAVLCGSNGE...

XP_057769846.1
MSASDEKIGDEEKHHTGAPEAASSDINDYKVIKEGEAEILMRVENEVFYNKAQVNNRDMSLAVLRTFISKRQQEHEARLLSRKMKSRAKEVAEPIVESKSVEHDEKSNGECDVPQDISQDEPCSILENAATNQGGKVPEELKPARVLEALSASGLRALRYAREVEGIEKVVALDNDKASVESCRRNIKLNGSVASSKVESHLADARVYMLTHPKEFDVVDLDPYGSPSVFLDSAVQSVVDGGILMCTATDMAVLCGSNGE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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