当前解析结果
SmilChr06G003047| 统一新 Gene ID | SmilChr06G003047 |
|---|---|
| 名称 | SmilChr06G003047 |
| 描述 | receptor-like protein kinase FERONIA |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 43332897 - 43335661 / - |
| NCBI Gene ID | LOC130989775 |
|---|---|
| GeneID | 130989775 |
| locus_tag | - |
| NCBI Name | LOC130989775 |
| 原始查询 | LOC130989775 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor-like protein kinase FERONIA |
| 产物 | receptor-like protein kinase FERONIA |
| Arabidopsis | AT3G51550 (FER)Malectin/receptor-like protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:824318] identity=49.2; qcov=0.966; evalue=0; confidence=high |
| Rice | Os01g0769700 (DRUS2)- identity=47; qcov=0.958; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF11721 (Malectin); PF12819 (Malectin_like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989775 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057769859.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057769859.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057769859.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057769859.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057769859.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:43333099 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B115,C55,C68 |
Chr6:43333105 |
T |
TAA |
2bp_insertion | frameshift_variant | 4 | B100,B122,C21,D5 |
Chr6:43333105 |
T |
TAA |
2bp_insertion | CDS_variant | 4 | B100,B122,C21,D5 |
Chr6:43333118 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A5,B86,C70,C86 |
Chr6:43333139 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B100,B122,C21,D5 |
Chr6:43333299 |
G |
A |
EMS_canonical_SNV | stop_gained | 24 | A13,A19,B123,B124,B137,B140,B26,B29,B50,B61,B74,B85,B87,B88,B99,C1,C11,C47,C58,C64,C67,C69,C7,C9 |
Chr6:43333305 |
C |
CA |
1bp_insertion | frameshift_variant | 5 | A14,A4,B34,C81,D8 |
Chr6:43333305 |
C |
CA |
1bp_insertion | CDS_variant | 5 | A14,A4,B34,C81,D8 |
Chr6:43333313 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B104,B66,C49 |
Chr6:43333337 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B24,B33,C85 |
Chr6:43333343 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B45,C47 |
Chr6:43333344 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057769859.1PF12819
Malectin_like 36-403 aa
PF11721
Malectin 271-355 aa
PF00069
Pkinase 524-789 aa
PF07714
PK_Tyr_Ser-Thr 525-790 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769859.1 |
Pfam | PF12819 |
Malectin_like | Domain | 36 | 403 | 8.8e-29 | 101.5 | Malectin-like domain |
XP_057769859.1 |
Pfam | PF11721 |
Malectin | Domain | 271 | 355 | 1.2e-09 | 39.2 | Malectin domain |
XP_057769859.1 |
Pfam | PF00069 |
Pkinase | Domain | 524 | 789 | 1.4e-46 | 159.7 | Protein kinase domain |
XP_057769859.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 525 | 790 | 8.7e-49 | 166.9 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。