当前解析结果
SmilChr06G003054| 统一新 Gene ID | SmilChr06G003054 |
|---|---|
| 名称 | SmilChr06G003054 |
| 描述 | E3 ubiquitin-protein ligase CIP8-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 43426340 - 43428376 / + |
| NCBI Gene ID | LOC130989780 |
|---|---|
| GeneID | 130989780 |
| locus_tag | - |
| NCBI Name | LOC130989780 |
| 原始查询 | LOC130989780 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | E3 ubiquitin-protein ligase CIP8-like |
| 产物 | E3 ubiquitin-protein ligase CIP8-like |
| Arabidopsis | AT5G15820 (AT5G15820)RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831439] identity=60; qcov=0.25; evalue=8.36e-40; confidence=weak |
| Rice | Os12g0118700- identity=44; qcov=0.336; evalue=6.5e-36; confidence=low |
| GO | GO:0006511 (ubiquitin-dependent protein catabolic process); GO:0061630 (ubiquitin protein ligase activity) |
| KEGG | - |
| Pfam | PF00097 (zf-C3HC4); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF17123 (zf-RING_11) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989780 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057769864.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057769864.1 |
| 3 | Cytosol | 细胞质基质 | 0.60000 | XP_057769864.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057769864.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057769864.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:43426523 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C20,C36,D2 |
Chr6:43426542 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B45,D10 |
Chr6:43426569 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr6:43426639 |
A |
AAT |
2bp_insertion | frameshift_variant | 10 | A21,B103,B134,B27,B28,B34,B57,B95,C17,C55 |
Chr6:43426728 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B120,B32 |
Chr6:43426819 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B111 |
Chr6:43426819 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B111 |
Chr6:43426822 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A21,B27,B57,C17 |
Chr6:43426843 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A21,B27,B57,C17 |
Chr6:43427037 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr6:43427346 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr6:43427350 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B16,C14,C82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057769864.1PF17123
zf-RING_11 337-364 aa
PF00097
zf-C3HC4 337-377 aa
PF13923
zf-C3HC4_2 337-377 aa
PF13639
zf-RING_2 337-378 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769864.1 |
Pfam | PF17123 |
zf-RING_11 | Domain | 337 | 364 | 1.5e-07 | 31.7 | RING-like zinc finger |
XP_057769864.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 337 | 377 | 1.4e-05 | 25.5 | Zinc finger, C3HC4 type (RING finger) |
XP_057769864.1 |
Pfam | PF13923 |
zf-C3HC4_2 | Domain | 337 | 377 | 6.7e-07 | 29.7 | Zinc finger, C3HC4 type (RING finger) |
XP_057769864.1 |
Pfam | PF13639 |
zf-RING_2 | Domain | 337 | 378 | 2.6e-12 | 47.5 | Ring finger domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。