Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G003072`

染色体: Chr06 坐标: 43608328-43611054 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G003072`
名称	SmilChr06G003072
描述	S-adenosylmethionine decarboxylase proenzyme-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	43608328 - 43611054 / `-`

ID 对照

NCBI Gene ID	`LOC130989800`
GeneID	`130989800`
locus_tag	`-`
NCBI Name	`LOC130989800`
原始查询	`LOC130989800`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	S-adenosylmethionine decarboxylase proenzyme-like
产物	S-adenosylmethionine decarboxylase proenzyme-like
Arabidopsis	`AT5G15950` (AT5G15950) Adenosylmethionine decarboxylase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831452] identity=64.3; qcov=1; evalue=1.59e-167; confidence=high
Rice	`Os04g0498600` (SAMDC) - identity=57.8; qcov=1.01; evalue=8.97e-137; confidence=high
GO	GO:0004014 (adenosylmethionine decarboxylase activity); GO:0005829 (cytosol); GO:0006597 (spermine biosynthetic process); GO:0008295 (spermidine biosynthetic process)
KEGG	smil00270 (Cysteine and methionine metabolism - Salvia miltiorrhiza (redroot sage)); smil00330 (Arginine and proline metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF01536 (SAM_decarbox)
InterPro	-
eggNOG	-
NR	GeneID:130989800

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057769879.1`
2	Cytoplasm	细胞质	1.00000	`XP_057769879.1`
3	Cytosol	细胞质基质	0.40000	`XP_057769879.1`
4	Chromosome	染色体	0.00000	`XP_057769879.1`
5	Centromere	着丝粒	0.00000	`XP_057769879.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:43608711`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B11
`Chr6:43608742`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B47,B81,C36
`Chr6:43608812`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B11
`Chr6:43608832`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C49
`Chr6:43608973`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C7
`Chr6:43609078`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr6:43609099`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C11,C69
`Chr6:43609201`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B65,B95
`Chr6:43609233`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr6:43609303`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B46,C49
`Chr6:43609489`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B65,B95

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769879.1

360 aa

180

360

SAM_decarbox

PF01536 SAM_decarbox 9-332 aa

XP_057769881.1

360 aa

180

360

SAM_decarbox

PF01536 SAM_decarbox 9-332 aa

XP_057769882.1

360 aa

180

360

SAM_decarbox

PF01536 SAM_decarbox 9-332 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769879.1`	Pfam	`PF01536`	SAM_decarbox	Family	9	332	1.1e-114	383.9	Adenosylmethionine decarboxylase
`XP_057769881.1`	Pfam	`PF01536`	SAM_decarbox	Family	9	332	1.1e-114	383.9	Adenosylmethionine decarboxylase
`XP_057769882.1`	Pfam	`PF01536`	SAM_decarbox	Family	9	332	1.1e-114	383.9	Adenosylmethionine decarboxylase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057913898.1
CCACCTATTCCTACTTCCATAAATTCCGCTCCTCCACACACCCTAATTCACAAAAACTCTTATATTTTTCTTCTCTCATATTGCAATTCAGTCGGTCGAGAACTCTCATTCTAGGGTTTGTTTTCGATCTTCTCATAGAAGTTATTTGTTTCAATACTTTTGGTTGCCGAAGCTTTGGGGATAAAGAGCCTCCTGGATCGGCTGTTTAAATTACAACAATCAACTTTTTGAATATCTGAATGATCTGATGGAGACAAAGG...

XM_057913896.1
CCTACTTCCATAAATTCCGCTCCTCCACACACCCTAATTCACAAAAACTCTTATATTTTTCTTCTCTCATATTGCAATTCAGTCGGTCGAGAACTCTCATTCTAGGGTTTGTTTTCGATCTTCTCATAGAAGTTATTTGTTTCAATACGTGAGTTTCTGTTTTGGTTGCCGAAGCTTTGGGGATAAAGAGCCTCCTGGATCGGCTGTTTAAATTACAACAATCAACTTTTTGAATATCTGAATGATCTGATGGAGACAAA...

CDS

3 records

下载 CDS FASTA

LOC130989800
ATGGCCATGCCAGTCTCTGCAATTGGGTTTGAGGGTTATGAGAAGAGGCTCGAGATTTCTTTCGTTGAGCCTGGAGTATTTGCTGATCCCGGAGGCTATGGCCTCCGCTCTCTCACCAAAGCACAGTTGGATGAAATCTTAGATCCAGCTCAATGCACCATTGTTGCATCTCTGAAGAACGATGATGTCGACTCCTATGTCCTGTCAGAGTCGAGCCTGTTTGTCTACTCGTACAAGATCATTCTGAAAACTTGTGGGAC...

Protein

3 records

下载 Protein FASTA

XP_057769879.1
MAMPVSAIGFEGYEKRLEISFVEPGVFADPGGYGLRSLTKAQLDEILDPAQCTIVASLKNDDVDSYVLSESSLFVYSYKIILKTCGTTKLLLSIPPILKLADGLGLTVSSVRYSRGSFIFPGAQPFPHRSFTEEVAVLDSHFSELGLMSEAYVMGDADEQEKWHVYSAYSKPLSDVDPVYTLEMCMTNLDQKKASVFFKNQSSSAAVMTDASGIRNILPESEICDFDFEPCGYSMNSIEGGAVSTIHVTPEDGFSYASFE...

XP_057769881.1
MAMPVSAIGFEGYEKRLEISFVEPGVFADPGGYGLRSLTKAQLDEILDPAQCTIVASLKNDDVDSYVLSESSLFVYSYKIILKTCGTTKLLLSIPPILKLADGLGLTVSSVRYSRGSFIFPGAQPFPHRSFTEEVAVLDSHFSELGLMSEAYVMGDADEQEKWHVYSAYSKPLSDVDPVYTLEMCMTNLDQKKASVFFKNQSSSAAVMTDASGIRNILPESEICDFDFEPCGYSMNSIEGGAVSTIHVTPEDGFSYASFE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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