Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G003075`

染色体: Chr06 坐标: 43635729-43640449 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G003075`
名称	SmilChr06G003075
描述	probable inactive ATP-dependent zinc metalloprotease FTSHI 3, chloroplastic
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	43635729 - 43640449 / `+`

ID 对照

NCBI Gene ID	`LOC130989802`
GeneID	`130989802`
locus_tag	`-`
NCBI Name	`LOC130989802`
原始查询	`LOC130989802`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable inactive ATP-dependent zinc metalloprotease FTSHI 3, chloroplastic
产物	probable inactive ATP-dependent zinc metalloprotease FTSHI 3%2C chloroplastic
Arabidopsis	`AT3G02450` (AT3G02450) cell division protein ftsH [Source:NCBI gene (formerly Entrezgene);Acc:821139] identity=70.2; qcov=0.83; evalue=0; confidence=high
Rice	`Os06g0725900` (OsFtsH1) - identity=62.5; qcov=0.401; evalue=3.51e-91; confidence=low
GO	GO:0004176 (ATP-dependent peptidase activity); GO:0004222 (metalloendopeptidase activity); GO:0005524 (ATP binding); GO:0006508 (proteolysis); GO:0008270 (zinc ion binding); GO:0009534 (chloroplast thylakoid); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity)
KEGG	-
Pfam	PF00004 (AAA); PF06480 (FtsH_ext); PF17862 (AAA_lid_3)
InterPro	-
eggNOG	-
NR	GeneID:130989802

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057769883.1`
2	Chloroplast membrane	叶绿体膜	0.80000	`XP_057769883.1`
3	Chloroplast thylakoid	类囊体	0.60000	`XP_057769883.1`
4	Nucleus	细胞核	0.00000	`XP_057769883.1`
5	Chromosome	染色体	0.00000	`XP_057769883.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:43636126`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B47,B81,C36
`Chr6:43636354`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A18,A19,B49,B70,C71
`Chr6:43636454`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B117
`Chr6:43636488`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A2,A7
`Chr6:43636578`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr6:43636695`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C49
`Chr6:43636992`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B108
`Chr6:43637661`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B47,B81,C36
`Chr6:43637769`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B108
`Chr6:43637898`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A18,A19,B49,B70,C71
`Chr6:43639071`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769883.1

611 aa

306

611

FtsH_ext

AAA

AAA_lid_3

PF06480 FtsH_ext 142-272 aa PF00004 AAA 359-488 aa PF17862 AAA_lid_3 519-557 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769883.1`	Pfam	`PF06480`	FtsH_ext	Family	142	272	3.9e-08	34.1	FtsH Extracellular
`XP_057769883.1`	Pfam	`PF00004`	AAA	Domain	359	488	6.3e-46	156.8	ATPase family associated with various cellular activities (AAA)
`XP_057769883.1`	Pfam	`PF17862`	AAA_lid_3	Domain	519	557	3.1e-13	49.7	AAA+ lid domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009090759.1
CCCCCCATTTTTTTTCACAAAGAGTCGGAAAAACAACAGACATAAAAATCTTCGGAATTCCCATGTTTTAGCTCTTATCTTCTCCTTCAATAGCTCGGCTAAACTGAGCCATATCTTCAATCTCAAATTCAAGATCATAAAGAAACAAGGTAAATCCTACACATTCTCTGAGGCCAATTTACCACTTGTTTATCAAATTAGATTGTGGCAAATCTTGCAGTGGGTGGGTTCATGGAAACTTCTTTTTACTATTAATAAAA...

XR_009090760.1
TTTTTTCACAAAGAGTCGGAAAAACAACAGACATAAAAATCTTCGGAATTCCCATGTTTTAGCTCTTATCTTCTCCTTCAATAGCTCGGCTAAACTGAGCCATATCTTCAATCTCAAATTCAAGATCATAAAGAAACAAGGTAAATCCTACACATTCTCTGAGGCCAATTTACCACTTGTTTATCAAATTAGATTGTGGCAAATCTTGCAGTGGGTGGGTTCATGGAAACTTCTTTTTACTATTAATAAAAAAATGGCTT...

CDS

1 records

下载 CDS FASTA

LOC130989802
ATGGCTTCTTTCCCTCTTGCTTGGAGCAATGGGTTCTTGATTGCACAAGAAAAGTTGAATCTTTGTGTTATAAATTCTAAAGTTTCTGCGGCAGATAGAACTCGCTCTTGTTCAATCTCCAAGAATAATTTTGGCCCTGCCTCTAGTCCCTTTTTGTTGAGTAATTGCTGTCGTAAACCGTATCATAGATTGTCATGTAGCAACAAGATTAGATTAATTGGAAATGAGAAGATAAATATTGATAGTCAGTTGGTTAGAGA...

Protein

1 records

下载 Protein FASTA

XP_057769883.1
MASFPLAWSNGFLIAQEKLNLCVINSKVSAADRTRSCSISKNNFGPASSPFLLSNCCRKPYHRLSCSNKIRLIGNEKINIDSQLVREGNHGKRRRWFSLRLRPRIRLLSRRLKRASIRSMLDALGTFLRKNVKRVTFSTSVSVVLGLCFLFLKLTAMPNPKGVPYSELIMNLQNGSVSKVLFEEGTRRIYYNTKLSTVEDKSVSKSEGVLENEPNKDASQNNVDEKDMLVKLTKQKNASPAWEFSTRKIDHDESYLLSLM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器