Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G003079

染色体: Chr06 坐标: 43678225-43682753 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G003079
名称SmilChr06G003079
描述protein FLX-like 2
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向43678225 - 43682753 / +

ID 对照

NCBI Gene IDLOC130989806
GeneID130989806
locus_tag-
NCBI NameLOC130989806
原始查询LOC130989806

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述protein FLX-like 2
产物protein FLX-like 2
ArabidopsisAT1G67170 (AT1G67170)
sarcolemmal membrane-associated protein [Source:NCBI gene (formerly Entrezgene);Acc:843037]
identity=48.2; qcov=0.709; evalue=1.03e-93; confidence=high
RiceOs02g0192100
-
identity=49.4; qcov=0.524; evalue=2.35e-61; confidence=medium
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130989806

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057769888.1
2 Cytoplasm 细胞质 0.40000 XP_057769888.1
3 Chromosome 染色体 0.00000 XP_057769888.1
4 Centromere 着丝粒 0.00000 XP_057769888.1
5 Chromatin 染色质 0.00000 XP_057769888.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr6:43680276 G A EMS_canonical_SNV CDS_variant 2 B90,B92
Chr6:43680278 C T EMS_canonical_SNV CDS_variant 1 C37
Chr6:43680429 C T EMS_canonical_SNV CDS_variant 1 C82
Chr6:43680504 C T EMS_canonical_SNV CDS_variant 1 B104
Chr6:43681318 G A EMS_canonical_SNV CDS_variant 4 B36,B83,C28,C59
Chr6:43681842 G A EMS_canonical_SNV CDS_variant 2 B75,C55
Chr6:43681851 G A EMS_canonical_SNV CDS_variant 1 C10
Chr6:43681912 G A EMS_canonical_SNV CDS_variant 2 C74,D4
Chr6:43682072 G A EMS_canonical_SNV CDS_variant 1 C10
Chr6:43682077 C CAT 2bp_insertion stop_gained,frameshift_variant 1 B6
Chr6:43682077 C CAT 2bp_insertion CDS_variant 1 B6
Chr6:43682308 C T EMS_canonical_SNV CDS_variant 1 C18

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057913906.1
TGTGTGGAACAACAATCCAATTGAAAAATAATACAGCAACGAGTCTTAACGATTCTCTGAAATTTCAATGGGGGAAGCAAACTTCACATAAAATGCGTACAAACCATCACGTAATCAAGCAAAACCCTGACCCCCCCAAATCTCATCTGAAGCCCACTGCTGTCGCCGGCGACGAGTGAGTGCAATTCCCATATGCATGATAAGTAATAATATCCAATATAAGAGGTCAAAGTTGGGAGATAATTATGGCAAGTAAAGGT...
XM_057913905.1
ATCCAATTGAAAAATAATACAGCAACGAGTCTTAACGATTCTCTGAAATTTCAATGGGGGAAGCAAACTTCACATAAAATGCGTACAAACCATCACGTAATCAAGCAAAACCCTGACCCCCCCAAATCTCATCTGAAGCCCACTGCTGTCGCCGGCGACGAGTGAGTGCAATTCCCATATGCATGATAAGTAATAATATCCAATATAAGAGGTCAAAGTTGGGAGATAATTATGGCAAGTAAAGGTCGAGTCCCTCCTCC...

CDS

2 records

下载 CDS FASTA
LOC130989806
ATGGCAAGTAAAGGTCGAGTCCCTCCTCCCCATCATCGTCGTCCTCTTCCTGGGCCTGGTGCAGTGCATCCTGATCCATATGCTTCTGCCGTTCATCCGCCTGTTGGTGGTTTTCCACATTTCGAAATGTTGCCTCCTCATGAACTAATGGCGCACAAGCTTTCTGCACAACATATTGAGATAGAGAAACTCGCAACAGAAAATCAGAGGCTTGCTGCTACTCATGGAACTCTGAGACAAGATCTTGCTACCGCCAAGCA...
LOC130989806
ATGGCAAGTAAAGGTCGAGTCCCTCCTCCCCATCATCGTCGTCCTCTTCCTGGGCCTGGTGCAGTGCATCCTGATCCATATGCTTCTGCCGTTCATCCGCCTGTTGGTGGTTTTCCACATTTCGAAATGTTGCCTCCTCATGAACTAATGGCGCACAAGCTTTCTGCACAACATATTGAGATAGAGAAACTCGCAACAGAAAATCAGAGGCTTGCTGCTACTCATGGAACTCTGAGACAAGATCTTGCTACCGCCAAGCA...

Protein

2 records

下载 Protein FASTA
XP_057769888.1
MASKGRVPPPHHRRPLPGPGAVHPDPYASAVHPPVGGFPHFEMLPPHELMAHKLSAQHIEIEKLATENQRLAATHGTLRQDLATAKHELQLIHAHIADVKSEKEKQTRAITEKMSMMESELKAAESIQKELQQARTEAQSLVSGRQELVSKVQQLNRDLQMAHSEAQHIPPLVAELDGLRQEYQHCRGTYEYEKKLYNDHLESLQVMEKNYMAMSREVEKLRAELSNSTNYDHRTGGLYGGSAGYSGNVPSGNYASGQAY...
XP_057769889.1
MASKGRVPPPHHRRPLPGPGAVHPDPYASAVHPPVGGFPHFEMLPPHELMAHKLSAQHIEIEKLATENQRLAATHGTLRQDLATAKHELQLIHAHIADVKSEKEKQTRAITEKMSMMESELKAAESIQKELQQARTEAQSLVSGRQELVSKVQQLNRDLQMAHSEAQHIPPLVAELDGLRQEYQHCRGTYEYEKKLYNDHLESLQVMEKNYMAMSREVEKLRAELSNSTNYDHRTGGLYGGSAGYSGNVPSGNYASGQAY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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