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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G003081

染色体: Chr06 坐标: 43690673-43695568 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G003081
名称SmilChr06G003081
描述uncharacterized SmilChr06G003081
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向43690673 - 43695568 / +

ID 对照

NCBI Gene IDLOC130989808
GeneID130989808
locus_tag-
NCBI NameLOC130989808
原始查询LOC130989808

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:843038]; symbol=AT1G67180; hit=AT1G67180; species=arabidopsis; confidence=medium
产物zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:843038]; symbol=AT1G67180; hit=AT1G67180; species=arabidopsis; confidence=medium
ArabidopsisAT1G67180 (AT1G67180)
zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:843038]
identity=35.9; qcov=1.01; evalue=2.28e-83; confidence=medium
RiceOs08g0414200 (OsRFP)
-
identity=55.6; qcov=0.369; evalue=6.24e-60; confidence=low
GO-
KEGG-
PfamPF00097 (zf-C3HC4); PF00533 (BRCT); PF12738 (PTCB-BRCT); PF13639 (zf-RING_2); PF13920 (zf-C3HC4_3)
InterPro-
eggNOG-
NRGeneID:130989808

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057769892.1
2 Chromosome 染色体 0.20000 XP_057769892.1
3 Centromere 着丝粒 0.00000 XP_057769892.1
4 Chromatin 染色质 0.00000 XP_057769892.1
5 Telomere 端粒 0.00000 XP_057769892.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr6:43691060 C T EMS_canonical_SNV CDS_variant 1 C44
Chr6:43692260 G A EMS_canonical_SNV CDS_variant 1 B134
Chr6:43692547 C T EMS_canonical_SNV CDS_variant 1 B134
Chr6:43692655 G A EMS_canonical_SNV CDS_variant 1 C18
Chr6:43693408 G A EMS_canonical_SNV CDS_variant 2 B131,B133
Chr6:43693477 C T EMS_canonical_SNV CDS_variant 3 B44,B97,C54
Chr6:43693479 G A EMS_canonical_SNV CDS_variant 1 C45
Chr6:43693553 G A EMS_canonical_SNV CDS_variant 1 B102
Chr6:43693600 G A EMS_canonical_SNV CDS_variant 1 B134
Chr6:43693667 G A EMS_canonical_SNV CDS_variant 2 B131,B133
Chr6:43693763 G A EMS_canonical_SNV CDS_variant 1 C5
Chr6:43693770 C T EMS_canonical_SNV CDS_variant 1 C37

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769892.1
512 aa
N
1
256
512
PTCB-BRCT
BRCT
zf-C3HC4_3
zf-RING_2
zf-C3HC4
C
PF12738 PTCB-BRCT 23-85 aa PF00533 BRCT 24-90 aa PF13920 zf-C3HC4_3 357-407 aa PF13639 zf-RING_2 359-405 aa PF00097 zf-C3HC4 360-404 aa
XP_057769893.1
493 aa
N
1
246
493
PTCB-BRCT
BRCT
zf-C3HC4_3
zf-RING_2
zf-C3HC4
C
PF12738 PTCB-BRCT 4-66 aa PF00533 BRCT 5-71 aa PF13920 zf-C3HC4_3 338-388 aa PF13639 zf-RING_2 340-386 aa PF00097 zf-C3HC4 341-385 aa
XP_057769894.1
458 aa
N
1
229
458
PTCB-BRCT
zf-C3HC4_3
zf-RING_2
zf-C3HC4
C
PF12738 PTCB-BRCT 7-31 aa PF13920 zf-C3HC4_3 303-353 aa PF13639 zf-RING_2 305-351 aa PF00097 zf-C3HC4 306-350 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057769892.1 Pfam PF12738 PTCB-BRCT Domain 23 85 3.5e-22 78.9 twin BRCT domain
XP_057769892.1 Pfam PF00533 BRCT Domain 24 90 2.2e-11 44.5 BRCA1 C Terminus (BRCT) domain
XP_057769892.1 Pfam PF13920 zf-C3HC4_3 Domain 357 407 4.4e-06 27.1 Zinc finger, C3HC4 type (RING finger)
XP_057769892.1 Pfam PF13639 zf-RING_2 Domain 359 405 2.8e-10 41.0 Ring finger domain
XP_057769892.1 Pfam PF00097 zf-C3HC4 Domain 360 404 7.4e-09 36.1 Zinc finger, C3HC4 type (RING finger)
XP_057769893.1 Pfam PF12738 PTCB-BRCT Domain 4 66 3.3e-22 79.0 twin BRCT domain
XP_057769893.1 Pfam PF00533 BRCT Domain 5 71 2.8e-11 44.2 BRCA1 C Terminus (BRCT) domain
XP_057769893.1 Pfam PF13920 zf-C3HC4_3 Domain 338 388 4.2e-06 27.2 Zinc finger, C3HC4 type (RING finger)
XP_057769893.1 Pfam PF13639 zf-RING_2 Domain 340 386 2.7e-10 41.1 Ring finger domain
XP_057769893.1 Pfam PF00097 zf-C3HC4 Domain 341 385 7e-09 36.1 Zinc finger, C3HC4 type (RING finger)
XP_057769894.1 Pfam PF12738 PTCB-BRCT Domain 7 31 4e-06 27.4 twin BRCT domain
XP_057769894.1 Pfam PF13920 zf-C3HC4_3 Domain 303 353 3.8e-06 27.3 Zinc finger, C3HC4 type (RING finger)
XP_057769894.1 Pfam PF13639 zf-RING_2 Domain 305 351 2.4e-10 41.2 Ring finger domain
XP_057769894.1 Pfam PF00097 zf-C3HC4 Domain 306 350 6.4e-09 36.3 Zinc finger, C3HC4 type (RING finger)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057913909.1
AAATTACTAGTGAGGCGAAAACTGTATATATATCGAACCAAAACAAAATTCAAAGTTCAAAATTTTCATTTTCGCGGCACAGATAGTTGCCAGTTGCCATGAAAGAGGATTCGCTTCAACACCATTTAGGATCTGCTCGTCACCTTGTGAAAGGAATGGAATCGGTAGTGGCGACGGTCAGCGGTTATCAGGGTTCCGAGAGATTTAATATAATCAAACTGATTGATCGCACTGGAGCTAGTTACGTTGGAAATATGAGC...
XM_057913910.1
GATTCGCTTCAACACCATTTAGGTAAATCAATATTTCGAGTTGCATAATATCGCTCTGATGAACTAGATAATTCATGATCTGCTCGTCACCTTGTGAAAGGAATGGAATCGGTAGTGGCGACGGTCAGCGGTTATCAGGGTTCCGAGAGATTTAATATAATCAAACTGATTGATCGCACTGGAGCTAGTTACGTTGGAAATATGAGCCAGTCAGTTACACATTTGGTGTGCTGGAAATTTGAAGGCAGAAAATATGAGCT...

CDS

3 records

下载 CDS FASTA
LOC130989808
ATGAAAGAGGATTCGCTTCAACACCATTTAGGATCTGCTCGTCACCTTGTGAAAGGAATGGAATCGGTAGTGGCGACGGTCAGCGGTTATCAGGGTTCCGAGAGATTTAATATAATCAAACTGATTGATCGCACTGGAGCTAGTTACGTTGGAAATATGAGCCAGTCAGTTACACATTTGGTGTGCTGGAAATTTGAAGGCAGAAAATATGAGCTTGCCAAGAAGTTTAGGATACCGGTTGTTAATCATTGCTGGATTGA...
LOC130989808
ATGGAATCGGTAGTGGCGACGGTCAGCGGTTATCAGGGTTCCGAGAGATTTAATATAATCAAACTGATTGATCGCACTGGAGCTAGTTACGTTGGAAATATGAGCCAGTCAGTTACACATTTGGTGTGCTGGAAATTTGAAGGCAGAAAATATGAGCTTGCCAAGAAGTTTAGGATACCGGTTGTTAATCATTGCTGGATTGAGGAATGCGTAAAGCAAGGAAGGCGTGTTTTGGAGGAGCCATATACCTATAGAAGTGG...

Protein

3 records

下载 Protein FASTA
XP_057769892.1
MKEDSLQHHLGSARHLVKGMESVVATVSGYQGSERFNIIKLIDRTGASYVGNMSQSVTHLVCWKFEGRKYELAKKFRIPVVNHCWIEECVKQGRRVLEEPYTYRSGEEMGHLVLDIDLAKAQSKDLKNAKRSFVETESEDINDAGWKNSILLDEDLFPKKRRNDHGSSRSIGKAIKRNSRKDCPSSSRRGLKKLSTTKNIELGEASTSHRAYSCRLEKRNSTSPESRSKGRRLVKKCTSLKDWLIISDVEEECEEVKVLP...
XP_057769893.1
MESVVATVSGYQGSERFNIIKLIDRTGASYVGNMSQSVTHLVCWKFEGRKYELAKKFRIPVVNHCWIEECVKQGRRVLEEPYTYRSGEEMGHLVLDIDLAKAQSKDLKNAKRSFVETESEDINDAGWKNSILLDEDLFPKKRRNDHGSSRSIGKAIKRNSRKDCPSSSRRGLKKLSTTKNIELGEASTSHRAYSCRLEKRNSTSPESRSKGRRLVKKCTSLKDWLIISDVEEECEEVKVLPEIKSRGDLVERHRSTKRHT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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