Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G003092

染色体: Chr06 坐标: 43774304-43777180 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G003092
名称SmilChr06G003092
描述uncharacterized SmilChr06G003092
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向43774304 - 43777180 / -

ID 对照

NCBI Gene IDLOC130989818
GeneID130989818
locus_tag-
NCBI NameLOC130989818
原始查询LOC130989818

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述golgin family A protein [Source:NCBI gene (formerly Entrezgene);Acc:831445]; symbol=AT5G15880; hit=AT5G15880; species=arabidopsis; confidence=high
产物golgin family A protein [Source:NCBI gene (formerly Entrezgene);Acc:831445]; symbol=AT5G15880; hit=AT5G15880; species=arabidopsis; confidence=high
ArabidopsisAT5G15880 (AT5G15880)
golgin family A protein [Source:NCBI gene (formerly Entrezgene);Acc:831445]
identity=56.7; qcov=1; evalue=5.54e-134; confidence=high
RiceOs09g0108400 (P0584E12.40-1)
-
identity=52; qcov=1; evalue=2.23e-89; confidence=high
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130989818

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Golgi apparatus 高尔基体 0.80000 XP_057769907.1
2 Nucleus membrane 核膜 0.40000 XP_057769907.1
3 Nucleus 细胞核 0.00000 XP_057769907.1
4 Chromosome 染色体 0.00000 XP_057769907.1
5 Centromere 着丝粒 0.00000 XP_057769907.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr6:43774424 G A EMS_canonical_SNV CDS_variant 1 A23
Chr6:43774442 C T EMS_canonical_SNV CDS_variant 2 B101,C48
Chr6:43774455 C T EMS_canonical_SNV CDS_variant 5 A19,B46,C32,C45,C68
Chr6:43774471 C T EMS_canonical_SNV CDS_variant 5 A25,B110,C18,C39,C63
Chr6:43774526 G A EMS_canonical_SNV CDS_variant 3 A11,B100,D11
Chr6:43774590 C T EMS_canonical_SNV CDS_variant 5 A1,B119,B91,B97,C6
Chr6:43774591 G A EMS_canonical_SNV CDS_variant 5 B66,B98,C53,C60,C78
Chr6:43774652 TGC T 2bp_deletion frameshift_variant 1 B71
Chr6:43774652 TGC T 2bp_deletion CDS_variant 1 B71
Chr6:43774766 G A EMS_canonical_SNV CDS_variant 5 A2,B28,B35,B93,D2
Chr6:43774809 C T EMS_canonical_SNV CDS_variant 1 D10
Chr6:43775718 C T EMS_canonical_SNV CDS_variant 5 A25,B110,C18,C39,C63

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057913924.1
GACTTGAAAGTGAAATGTTATTTTTGGCATAGTTTGACATTAACATATTCATAAAACAAAGCAGGTGACCTAAATCAATTTGGGGGAAATCCAACACCAGTAGTATCACTAGTTTGCAACCGGAAACAACAGTTGATGGCCGGCTTACTAGCGTGGGCGGCCGACGTCGTCGGAGGCGGTGGCGGTGGGTGGAGCGACGAAGAGGCTGATCCCAATTCCATACCTCTCATCTTCACGCCCGAGCAACTGACCTACGTTAA...

CDS

1 records

下载 CDS FASTA
LOC130989818
ATGGCCGGCTTACTAGCGTGGGCGGCCGACGTCGTCGGAGGCGGTGGCGGTGGGTGGAGCGACGAAGAGGCTGATCCCAATTCCATACCTCTCATCTTCACGCCCGAGCAACTGACCTACGTTAAGGAGCTAGACAGCAAAACAGCTTCTCTCAACCGCGCGATCCAAGATCTGCGGCTGAGACTGCCCCCTCCCGATATTTCTCAACGCCTTCCTCATCTCCACGCTCATTCTCTTGCCTCCAACAACGCTCTCGCTCT...

Protein

1 records

下载 Protein FASTA
XP_057769907.1
MAGLLAWAADVVGGGGGGWSDEEADPNSIPLIFTPEQLTYVKELDSKTASLNRAIQDLRLRLPPPDISQRLPHLHAHSLASNNALALQLNAHSSTKQEAQQREARLLQENAEYQHAISNCEIKIQEKLQEADLLLSKLKELDLIEQNLLAELQRAQVSADASNSGESNRMLNESQQTIKAQEDAKAAKSALMKKLDSKRKELAAIEEIVQELEKKWLQVQDSALKKPTPAQREKALDKQLHSLIEQLAAKQAQAEGLIGE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器