当前解析结果
SmilChr06G003099| 统一新 Gene ID | SmilChr06G003099 |
|---|---|
| 名称 | SmilChr06G003099 |
| 描述 | probable histone acetyltransferase HAC-like 3 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 43832387 - 43842049 / + |
| NCBI Gene ID | LOC130989825 |
|---|---|
| GeneID | 130989825 |
| locus_tag | - |
| NCBI Name | LOC130989825 |
| 原始查询 | LOC130989825 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable histone acetyltransferase HAC-like 3 |
| 产物 | probable histone acetyltransferase HAC-like 3 |
| Arabidopsis | AT1G79000 (HAC1)histone acetyltransferase of the CBP family 1 [Source:NCBI gene (formerly Entrezgene);Acc:844241] identity=49.2; qcov=0.512; evalue=0; confidence=medium |
| Rice | Os02g0137500 (OsHAC703)- identity=50.2; qcov=0.4; evalue=0; confidence=low |
| GO | GO:0000123 (histone acetyltransferase complex); GO:0003713 (transcription coactivator activity); GO:0004402 (histone acetyltransferase activity); GO:0005667 (transcription regulator complex); GO:0008270 (zinc ion binding); GO:0016573 (GO:0016573); GO:0031490 (chromatin DNA binding); GO:0045944 (positive regulation of transcription by RNA polymerase II) |
| KEGG | smil03083 (Polycomb repressive complex - Salvia miltiorrhiza (redroot sage)); smil03250 (Viral life cycle - HIV-1 - Salvia miltiorrhiza (redroot sage)); smil04519 (Cadherin signaling - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00628 (PHD); PF02135 (zf-TAZ); PF29847 (KAT3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989825 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057769919.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057769919.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057769919.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057769919.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057769919.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:43833529 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B55,B91,C17,C23,C72 |
Chr6:43833553 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B140,B75 |
Chr6:43834293 |
GC |
G |
1bp_deletion | frameshift_variant | 113 | A1,A11,A13,A15,A16,A2,A23,A3,A6,A8,A9,B10,B101,B102,B105,B110,B112,B117,B118,B12,B120,B121,B122,B123,B126,B128,B129,B13,B133,B137,B140,B15,B16,B18,B2,B22,B23,B24,B29,B3,B30,B31,B37,B38,B39,B4,B41,B47,B5,B51,B54,B56,B6,B60,B61,B63,B66,B7,B73,B74,B77,B78,B79,B84,B85,B87,B88,B90,B92,B94,B96,B98,B99,C1,C21,C23,C26,C27,C28,C29,C30,C31,C32,C33,C35,C4,C41,C48,C5,C50,C51,C60,C64,C66,C67,C68,C7,C70,C71,C72,C73,C74,C76,C8,C82,C83,C85,C87,D11,D2,D4,D6,D9 |
Chr6:43834352 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B50,C34 |
Chr6:43834925 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A25,C18,C39,C63,C83 |
Chr6:43835021 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B115,B19,C44,C54 |
Chr6:43835051 |
CGG |
C |
2bp_deletion | frameshift_variant | 33 | A10,B100,B104,B11,B138,B15,B19,B21,B45,B46,B5,B59,B70,B8,B89,B9,C11,C14,C21,C22,C24,C32,C33,C45,C46,C49,C50,C6,C68,C69,C80,C9,D7 |
Chr6:43835135 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A2,B35,B6,C78 |
Chr6:43835300 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr6:43835316 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A18,A19,C71 |
Chr6:43835429 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr6:43835444 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B102 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057769919.1PF00628
PHD 891-931 aa
PF29847
KAT3 980-1226 aa
PF02135
zf-TAZ 1464-1536 aa
XP_057769921.1PF00628
PHD 891-931 aa
PF29847
KAT3 980-1226 aa
PF02135
zf-TAZ 1464-1536 aa
XP_057769922.1PF00628
PHD 887-927 aa
PF29847
KAT3 976-1222 aa
PF02135
zf-TAZ 1460-1532 aa
XP_057769923.1PF00628
PHD 864-904 aa
PF29847
KAT3 953-1199 aa
PF02135
zf-TAZ 1437-1509 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769919.1 |
Pfam | PF00628 |
PHD | Domain | 891 | 931 | 1.2e-06 | 29.1 | PHD-finger |
XP_057769919.1 |
Pfam | PF29847 |
KAT3 | Domain | 980 | 1226 | 5.1e-73 | 246.9 | Histone acetyltransferase domain KAT3 |
XP_057769919.1 |
Pfam | PF02135 |
zf-TAZ | Family | 1464 | 1536 | 5.4e-11 | 43.5 | TAZ zinc finger |
XP_057769921.1 |
Pfam | PF00628 |
PHD | Domain | 891 | 931 | 1.2e-06 | 29.1 | PHD-finger |
XP_057769921.1 |
Pfam | PF29847 |
KAT3 | Domain | 980 | 1226 | 5.1e-73 | 246.9 | Histone acetyltransferase domain KAT3 |
XP_057769921.1 |
Pfam | PF02135 |
zf-TAZ | Family | 1464 | 1536 | 5.4e-11 | 43.5 | TAZ zinc finger |
XP_057769922.1 |
Pfam | PF00628 |
PHD | Domain | 887 | 927 | 1.2e-06 | 29.1 | PHD-finger |
XP_057769922.1 |
Pfam | PF29847 |
KAT3 | Domain | 976 | 1222 | 5.1e-73 | 246.9 | Histone acetyltransferase domain KAT3 |
XP_057769922.1 |
Pfam | PF02135 |
zf-TAZ | Family | 1460 | 1532 | 5.4e-11 | 43.5 | TAZ zinc finger |
XP_057769923.1 |
Pfam | PF00628 |
PHD | Domain | 864 | 904 | 1.2e-06 | 29.1 | PHD-finger |
XP_057769923.1 |
Pfam | PF29847 |
KAT3 | Domain | 953 | 1199 | 5.2e-73 | 246.9 | Histone acetyltransferase domain KAT3 |
XP_057769923.1 |
Pfam | PF02135 |
zf-TAZ | Family | 1437 | 1509 | 5.3e-11 | 43.5 | TAZ zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。