Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G003100`

染色体: Chr06 坐标: 43843879-43850440 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G003100`
名称	SmilChr06G003100
描述	nuclear matrix constituent protein 1
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	43843879 - 43850440 / `-`

ID 对照

NCBI Gene ID	`LOC130989826`
GeneID	`130989826`
locus_tag	`-`
NCBI Name	`LOC130989826`
原始查询	`LOC130989826`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	nuclear matrix constituent protein 1
产物	nuclear matrix constituent protein 1
Arabidopsis	`AT1G67230` (LINC1) little nuclei1 [Source:NCBI gene (formerly Entrezgene);Acc:843043] identity=44.2; qcov=1.04; evalue=0; confidence=medium
Rice	`Os01g0767000` (NMCP1B) - identity=30.2; qcov=0.675; evalue=8.89e-68; confidence=low
GO	GO:0005634 (nucleus); GO:0006997 (nucleus organization)
KEGG	-
Pfam	PF27881 (CRWN_N); PF30919 (CRWN_second_CC)
InterPro	-
eggNOG	-
NR	GeneID:130989826

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057769924.1`
2	Cytoskeleton	细胞骨架	0.40000	`XP_057769924.1`
3	Chromosome	染色体	0.20000	`XP_057769924.1`
4	Nucleus membrane	核膜	0.20000	`XP_057769924.1`
5	Phragmoplast	Phragmoplast	0.20000	`XP_057769924.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:43844221`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B42,B43,B76
`Chr6:43844324`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr6:43844470`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A1
`Chr6:43844489`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr6:43845331`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B13,B49
`Chr6:43845634`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B32,B49,D11
`Chr6:43845820`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C46
`Chr6:43846249`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A18
`Chr6:43846529`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A18
`Chr6:43846738`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr6:43846923`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr6:43847069`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B119,C6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769924.1

1152 aa

576

1152

CRWN_N

CRWN_second_CC

PF27881 CRWN_N 53-349 aa PF30919 CRWN_second_CC 481-727 aa

XP_057769925.1

1152 aa

576

1152

CRWN_N

CRWN_second_CC

PF27881 CRWN_N 53-349 aa PF30919 CRWN_second_CC 481-727 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769924.1`	Pfam	`PF27881`	CRWN_N	Domain	53	349	4e-118	394.6	CROWDED NUCLEI 2, N-terminal domain
`XP_057769924.1`	Pfam	`PF30919`	CRWN_second_CC	Coiled-coil	481	727	1.6e-90	303.6	CRWN second coiled-coil domain
`XP_057769925.1`	Pfam	`PF27881`	CRWN_N	Domain	53	349	6.4e-118	393.9	CROWDED NUCLEI 2, N-terminal domain
`XP_057769925.1`	Pfam	`PF30919`	CRWN_second_CC	Coiled-coil	481	727	1.6e-90	303.6	CRWN second coiled-coil domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057913941.1
AAGTAAAGTAAGGCAGGTTTGCCTCATTCCCAAAGCTTCAAACACCGTGGCATTACATTACAGTGAGTGCACCACAGTATTATTCCTTTTCTTAATATTCACACAAACACCCCCAGATTTCCCGTTTTTTACACATCAACCCCTCAGTGCGAGGGCAGTTTCGTCCTAAGATTTATGCTCCACGTTGGTCACAGAAAGGCGGCCCTGCGATATTCCCGTATTGCCCCGCTCCAACGGATATAAAAGCATCGTTTCCGGGG...

XM_057913942.1
AAGTAAAGTAAGGCAGGTTTGCCTCATTCCCAAAGCTTCAAACACCGTGGCATTACATTACAGTGAGTGCACCACAGTATTATTCCTTTTCTTAATATTCACACAAACACCCCCAGATTTCCCGTTTTTTACACATCAACCCCTCAGTGCGAGGGCAGTTTCGTCCTAAGATTTATGCTCCACGTTGGTCACAGAAAGGCGGCCCTGCGATATTCCCGTATTGCCCCGCTCCAACGGATATAAAAGCATCGTTTCCGGGG...

CDS

2 records

下载 CDS FASTA

LOC130989826
ATGTTTTCGCCGCAGAAGTTGTGGGCGGTGACGCCTAGGAGCGAGCCGGTTCAGAAGAGCGGGTCCGGGCCTGCTTCGGGCTTGAACGCTAGCTCGTTGAGCCCGAGGAATGGCGAGGCTTTGGCGAAAGGGAAAGCTGTGGCATTTGTTCTGGACGACCGAGACCCGTTGACTGAGAAGGTCTCGAAGCTCGAGAATGAGCTTTTTGAGTATCAGTACAACATGGGGCTTCTTTTGATTGAAAAGAAGGATTGGAGTTT...

Protein

2 records

下载 Protein FASTA

XP_057769924.1
MFSPQKLWAVTPRSEPVQKSGSGPASGLNASSLSPRNGEALAKGKAVAFVLDDRDPLTEKVSKLENELFEYQYNMGLLLIEKKDWSFKYDELKQALADVTDNLKREQAAHSSAMFEVEKREENLKKALGVERQCVLDLEKALREMRSEHAEIKFNADSKLAEANALVTGVEEKSLEVEAKLHAADAKLAGVSRKSSEIERKLHELEAQENLLRRERSLFTTEREARDADMSKQREDLREWERKLQEAEERLVDGRRLLNQ...

XP_057769925.1
MFSPQKLWAVTPRSEPVQKSGSGPASGLNASSLSPRNGEALAKGKAVAFVLDDRDPLTEKVSKLENELFEYQYNMGLLLIEKKDWSFKYDELKQALADVTDNLKREQAAHSSAMFEVEKREENLKKALGVERQCVLDLEKALREMRSEHAEIKFNADSKLAEANALVTGVEEKSLEVEAKLHAADAKLAGVSRKSSEIERKLHELEAQENLLRRERSLFTTEREARDADMSKQREDLREWERKLQEAEERLVDGRRLLNQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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