Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G003110`

染色体: Chr06 坐标: 43951246-43952777 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G003110`
名称	SmilChr06G003110
描述	uncharacterized SmilChr06G003110
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	43951246 - 43952777 / `+`

ID 对照

NCBI Gene ID	`LOC130989836`
GeneID	`130989836`
locus_tag	`-`
NCBI Name	`LOC130989836`
原始查询	`LOC130989836`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816910]; symbol=AT2G23780; hit=AT2G23780; species=arabidopsis; confidence=high
产物	RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816910]; symbol=AT2G23780; hit=AT2G23780; species=arabidopsis; confidence=high
Arabidopsis	`AT2G23780` (AT2G23780) RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816910] identity=51.5; qcov=0.911; evalue=2.44e-66; confidence=high
Rice	`Os12g0636000` (OsRDCP5) - identity=48.8; qcov=0.951; evalue=7.54e-62; confidence=high
GO	GO:0005783 (endoplasmic reticulum); GO:0006511 (ubiquitin-dependent protein catabolic process); GO:0044390 (ubiquitin-like protein conjugating enzyme binding); GO:0046872 (metal ion binding); GO:0061630 (ubiquitin protein ligase activity); GO:0071712 (GO:0071712)
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF13445 (zf-RING_UBOX); PF13639 (zf-RING_2); PF13920 (zf-C3HC4_3); PF13923 (zf-C3HC4_2); PF14634 (zf-RING_5); PF15227 (zf-C3HC4_4)
InterPro	-
eggNOG	-
NR	GeneID:130989836

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.80000	`XP_057769944.1`
2	Endoplasmic reticulum membrane	内质网膜	0.80000	`XP_057769944.1`
3	Cytosol	细胞质基质	0.20000	`XP_057769944.1`
4	Endosome	内体	0.20000	`XP_057769944.1`
5	Lipid droplet	脂滴	0.20000	`XP_057769944.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:43951998`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr6:43952025`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B128,B138,C13,C41
`Chr6:43952071`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C76
`Chr6:43952119`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B33,B53,B80,C86
`Chr6:43952277`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A23,C84
`Chr6:43952485`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B53
`Chr6:43952627`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A23,B126,C84

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769944.1

224 aa

112

224

zf-C3HC4_3

zf-C3HC4_2

zf-RING_2

zf-RING_5

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_4

PF13920 zf-C3HC4_3 28-74 aa PF13923 zf-C3HC4_2 29-70 aa PF13639 zf-RING_2 29-71 aa PF14634 zf-RING_5 29-71 aa PF13445 zf-RING_UBOX 30-68 aa PF00097 zf-C3HC4 30-70 aa PF15227 zf-C3HC4_4 30-70 aa

XP_057769945.1

224 aa

112

224

zf-C3HC4_3

zf-C3HC4_2

zf-RING_2

zf-RING_5

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_4

XP_057769946.1

224 aa

112

224

zf-C3HC4_3

zf-C3HC4_2

zf-RING_2

zf-RING_5

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_4

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769944.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	28	74	1.2e-08	35.3	Zinc finger, C3HC4 type (RING finger)
`XP_057769944.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	29	70	2.8e-09	37.4	Zinc finger, C3HC4 type (RING finger)
`XP_057769944.1`	Pfam	`PF13639`	zf-RING_2	Domain	29	71	1e-08	36.0	Ring finger domain
`XP_057769944.1`	Pfam	`PF14634`	zf-RING_5	Domain	29	71	4.9e-08	33.5	zinc-RING finger domain
`XP_057769944.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	30	68	3.6e-09	37.2	RING-type zinc-finger
`XP_057769944.1`	Pfam	`PF00097`	zf-C3HC4	Domain	30	70	7.2e-10	39.3	Zinc finger, C3HC4 type (RING finger)
`XP_057769944.1`	Pfam	`PF15227`	zf-C3HC4_4	Domain	30	70	2.3e-07	31.5	zinc finger of C3HC4-type, RING
`XP_057769945.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	28	74	1.2e-08	35.3	Zinc finger, C3HC4 type (RING finger)
`XP_057769945.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	29	70	2.8e-09	37.4	Zinc finger, C3HC4 type (RING finger)
`XP_057769945.1`	Pfam	`PF13639`	zf-RING_2	Domain	29	71	1e-08	36.0	Ring finger domain
`XP_057769945.1`	Pfam	`PF14634`	zf-RING_5	Domain	29	71	4.9e-08	33.5	zinc-RING finger domain
`XP_057769945.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	30	68	3.6e-09	37.2	RING-type zinc-finger
`XP_057769945.1`	Pfam	`PF00097`	zf-C3HC4	Domain	30	70	7.2e-10	39.3	Zinc finger, C3HC4 type (RING finger)
`XP_057769945.1`	Pfam	`PF15227`	zf-C3HC4_4	Domain	30	70	2.3e-07	31.5	zinc finger of C3HC4-type, RING
`XP_057769946.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	28	74	1.2e-08	35.3	Zinc finger, C3HC4 type (RING finger)
`XP_057769946.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	29	70	2.8e-09	37.4	Zinc finger, C3HC4 type (RING finger)
`XP_057769946.1`	Pfam	`PF13639`	zf-RING_2	Domain	29	71	1e-08	36.0	Ring finger domain
`XP_057769946.1`	Pfam	`PF14634`	zf-RING_5	Domain	29	71	4.9e-08	33.5	zinc-RING finger domain
`XP_057769946.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	30	68	3.6e-09	37.2	RING-type zinc-finger
`XP_057769946.1`	Pfam	`PF00097`	zf-C3HC4	Domain	30	70	7.2e-10	39.3	Zinc finger, C3HC4 type (RING finger)
`XP_057769946.1`	Pfam	`PF15227`	zf-C3HC4_4	Domain	30	70	2.3e-07	31.5	zinc finger of C3HC4-type, RING

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057913962.1
ACGACAAACACAAGTAGTTGAATTTTGAAACATATATAAATAAATGGGAACAAATGTCAAATTCTCACCGAGACCAAACCAGCGCTCAACAGAATCAGCTGGAAATTTCTGGAATTAAAATATCTTCCGCATTTGTAAACAATTCTCTTATTTATCGTTCATTATTTTGATTCCTCGCCGTACTAATCAGCTTACAGAGTAGGGATTGGATTAGAAGCAATCTGAGGTTGCAATCGAGGTTCATTTTGTTCACTTCTGGC...

XM_057913961.1
AGTAGTTGAATTTTGAAACATATATAAATAAATGGGAACAAATGTCAAATTCTCACCGAGACCAAACCAGCGCTCAACAGAATCAGCTGGAAATTTCTGGAATTAAAATATCTTCCGCATTTGTAAACAATTCTCTTATTTATCGTTCATTATTTTGATTCCTCGCCGTACTAATCAGCTTACAGAGGGATTGGATTAGAAGCAATCTGAGGTTGCAATCGAGGTTCATTTTGTTCACTTCTGGCAGCATTTGGATTTTG...

CDS

3 records

下载 CDS FASTA

LOC130989836
ATGGCAGAGGCTCATCATCCGACTACCAGTGCACCGGAGAGCTCGCCTTCCTCGCGGAGCGACGGCAGTGGAGCTGTTGATTTTGAATGTAACATTTGTTTCGATTTAGCGCAGGATCCGGTGATTACACTCTGTGGGCATCTATATTGCTGGCCATGCCTATATAGATGGCTAAAAGGTCACTCTCAGTCCCATGAATGCCCTGTTTGCAAGGCCCTGGTAGATGAGGAGAAGGTGATTCCGCTTTACGGCAGAGGGAA...

Protein

3 records

下载 Protein FASTA

XP_057769944.1
MAEAHHPTTSAPESSPSSRSDGSGAVDFECNICFDLAQDPVITLCGHLYCWPCLYRWLKGHSQSHECPVCKALVDEEKVIPLYGRGKTPVDPRLKPVPGIEIPNRPAGQRPETARFSDNNLASLIMGLMGGFVPVASATFSNFGMSAGFGGLVFPLFSIQLHGFSNANGHGGSSGYNYGYAGSFRDSEGRLNREASQAAQADDENLKKILLVVLLLVLFAFLTM

XP_057769945.1
MAEAHHPTTSAPESSPSSRSDGSGAVDFECNICFDLAQDPVITLCGHLYCWPCLYRWLKGHSQSHECPVCKALVDEEKVIPLYGRGKTPVDPRLKPVPGIEIPNRPAGQRPETARFSDNNLASLIMGLMGGFVPVASATFSNFGMSAGFGGLVFPLFSIQLHGFSNANGHGGSSGYNYGYAGSFRDSEGRLNREASQAAQADDENLKKILLVVLLLVLFAFLTM

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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