当前解析结果
SmilChr06G003118| 统一新 Gene ID | SmilChr06G003118 |
|---|---|
| 名称 | SmilChr06G003118 |
| 描述 | protein LYK5-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 44013784 - 44015887 / + |
| NCBI Gene ID | LOC130989843 |
|---|---|
| GeneID | 130989843 |
| locus_tag | - |
| NCBI Name | LOC130989843 |
| 原始查询 | LOC130989843 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein LYK5-like |
| 产物 | protein LYK5-like |
| Arabidopsis | AT2G23770 (LYK4)protein kinase family protein / peptidoglycan-binding LysM domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:816909] identity=34.7; qcov=1.03; evalue=1.35e-108; confidence=low |
| Rice | Os06g0625200 (OsLysM-RLK6)- identity=34; qcov=1.05; evalue=7.5e-90; confidence=low |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF01476 (LysM); PF07714 (PK_Tyr_Ser-Thr); PF23446 (LysM1_NFP_LYK); PF23472 (LysM2_CERK1_LYK3_4_5); PF23473 (LysM3_LYK4_5) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130989843 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057769955.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057769955.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057769955.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057769955.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057769955.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:44014071 |
CTT |
C |
2bp_deletion | frameshift_variant | 1 | A15 |
Chr6:44014071 |
CTT |
C |
2bp_deletion | CDS_variant | 1 | A15 |
Chr6:44014244 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D2 |
Chr6:44014321 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C15,D10 |
Chr6:44014330 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B37,B45,B50,C47 |
Chr6:44014356 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:44014405 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D2 |
Chr6:44014498 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B131,B95 |
Chr6:44014504 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A23 |
Chr6:44014557 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr6:44014583 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B131,B95 |
Chr6:44014813 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057769955.1PF23446
LysM1_NFP_LYK 58-114 aa
PF01476
LysM 72-109 aa
PF23472
LysM2_CERK1_LYK3_4_5 118-173 aa
PF23473
LysM3_LYK4_5 188-237 aa
PF01476
LysM 198-236 aa
PF00069
Pkinase 360-602 aa
PF07714
PK_Tyr_Ser-Thr 362-524 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057769955.1 |
Pfam | PF23446 |
LysM1_NFP_LYK | Domain | 58 | 114 | 2.6e-21 | 76.9 | NFP/LYK LysM1 domain |
XP_057769955.1 |
Pfam | PF01476 |
LysM | Domain | 72 | 109 | 1e-08 | 35.7 | LysM domain |
XP_057769955.1 |
Pfam | PF23472 |
LysM2_CERK1_LYK3_4_5 | Domain | 118 | 173 | 3.3e-25 | 88.5 | LYK3/4/5 LysM2 domain |
XP_057769955.1 |
Pfam | PF23473 |
LysM3_LYK4_5 | Domain | 188 | 237 | 8.7e-20 | 71.3 | LYK4/5 LysM3 domain |
XP_057769955.1 |
Pfam | PF01476 |
LysM | Domain | 198 | 236 | 1e-08 | 35.7 | LysM domain |
XP_057769955.1 |
Pfam | PF00069 |
Pkinase | Domain | 360 | 602 | 5.1e-36 | 125.1 | Protein kinase domain |
XP_057769955.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 362 | 524 | 2.6e-34 | 119.4 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。