Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G003121`

染色体: Chr06 坐标: 44031114-44035643 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G003121`
名称	SmilChr06G003121
描述	protein DA1-related 1-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	44031114 - 44035643 / `-`

ID 对照

NCBI Gene ID	`LOC130989848`
GeneID	`130989848`
locus_tag	`-`
NCBI Name	`LOC130989848`
原始查询	`LOC130989848`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein DA1-related 1-like
产物	protein DA1-related 1-like
Arabidopsis	`AT4G36860` (AT4G36860) LIM domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:829839] identity=62.7; qcov=1.04; evalue=0; confidence=high
Rice	`Os06g0182500` - identity=64.9; qcov=1; evalue=0; confidence=high
GO	GO:0043130 (ubiquitin binding)
KEGG	-
Pfam	PF00412 (LIM); PF12315 (DA1-like)
InterPro	-
eggNOG	-
NR	GeneID:130989848

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057769961.1`
2	Cytoplasm	细胞质	0.60000	`XP_057769961.1`
3	Cytosol	细胞质基质	0.40000	`XP_057769961.1`
4	Chromosome	染色体	0.00000	`XP_057769961.1`
5	Centromere	着丝粒	0.00000	`XP_057769961.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:44031422`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C40
`Chr6:44031589`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B121,C16,C35
`Chr6:44031852`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B5,D1
`Chr6:44031952`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D2
`Chr6:44032188`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C35
`Chr6:44032456`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B104,B5,C41,D1
`Chr6:44032985`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B81
`Chr6:44032988`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C41
`Chr6:44033951`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr6:44034045`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr6:44034091`	`G`	`GA`	1bp_insertion	frameshift_variant	8	B136,B22,B73,C26,C29,C61,C75,D5
`Chr6:44034112`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B135,B21,C15,C27

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769961.1

536 aa

268

536

LIM

DA1-like

PF00412 LIM 167-221 aa PF12315 DA1-like 317-531 aa

XP_057769962.1

536 aa

268

536

LIM

DA1-like

PF00412 LIM 167-221 aa PF12315 DA1-like 317-531 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769961.1`	Pfam	`PF00412`	LIM	Domain	167	221	5.8e-10	40.0	LIM domain
`XP_057769961.1`	Pfam	`PF12315`	DA1-like	Family	317	531	1.6e-100	335.6	Protein DA1
`XP_057769962.1`	Pfam	`PF00412`	LIM	Domain	167	221	5.8e-10	40.0	LIM domain
`XP_057769962.1`	Pfam	`PF12315`	DA1-like	Family	317	531	1.6e-100	335.6	Protein DA1

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057913978.1
GAAACCTCCAAAATTATGGTGGATGAAAAGAAGCCAAGTTTTTGGCATATGTTTGCTTAGAATTCAAGTAGTTGTTAGGTGTCCACTTTGTTCTTGAGTGGGTTATAGTCCAGCACAAATTCAGCACTCGCCATTTATGCTTCTCCTTAGTAATTCGATTGGGTGATATTTTTTTTTTTTTTGAGGAAAATTGGGTGATATTGTGATGTGTGGAAATGGAGTATTCTTTCTATCAGCTCTCGTGACTCTTCTTGGTTATT...

XM_057913979.1
TCCAAAATTATGGTGGATGAAAAGAAGCCAAGTTTTTGGCATATGTTTGCTTAGAATTCAAGTAGTTGTTAGGTGTCCACTTTGTTCTTGAGTGGGTTATAGTCCAGCACAAATTCAGCACTCGCCATTTATGCTTCTCCTTAGTAATTCGATTGGGTGATATTTTTTTTTTTTTTGAGGAAAATTGGGTGATATTGTGATGTGTGGAAATGGAGTATTCTTTCTATCAGCTCTCGTGACTCTTCTTGGTTATTATGCTT...

CDS

2 records

下载 CDS FASTA

LOC130989848
ATGGGCTGGCTAACCAAGATCCTTAAAGGCCCCAGCCACAGAATCTCAAAAGGGCAGTATCATGGGAAATATGAAGATGATACAATTTGGGAAGGGCCTCCGATTTCAGTGGATCAATTGTCAGATTTCGATAAGGAAGAACTTGATAGAGCAATTGCACTCTCCATTGCTGAAGTGGATGAGAAAGAGAAAGGGAAACAAGTTGTAGATGACGAGTCTCAGTTGGACGAAGACGAACAGCTTGCTAAGGCTCTGCAAGA...

Protein

2 records

下载 Protein FASTA

XP_057769961.1
MGWLTKILKGPSHRISKGQYHGKYEDDTIWEGPPISVDQLSDFDKEELDRAIALSIAEVDEKEKGKQVVDDESQLDEDEQLAKALQESWNVESTPQSSPPRSPSPQAPSPRSPSPQPPSPRSPSPQPPPPPPQSPPPQQPPTRSPNFDYGSFVAPSPFYYPSGYRICAGCNSEIGHGRYLSCMGAVWHPECFCCHACNQAISDYEFSMSDNRPFHKSCYKDLHHPKCDVCKNFIPTNAAGLIEYRAHPFWHQKYCPAHEH...

XP_057769962.1
MGWLTKILKGPSHRISKGQYHGKYEDDTIWEGPPISVDQLSDFDKEELDRAIALSIAEVDEKEKGKQVVDDESQLDEDEQLAKALQESWNVESTPQSSPPRSPSPQAPSPRSPSPQPPSPRSPSPQPPPPPPQSPPPQQPPTRSPNFDYGSFVAPSPFYYPSGYRICAGCNSEIGHGRYLSCMGAVWHPECFCCHACNQAISDYEFSMSDNRPFHKSCYKDLHHPKCDVCKNFIPTNAAGLIEYRAHPFWHQKYCPAHEH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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