Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G003132`

染色体: Chr06 坐标: 44195832-44202052 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G003132`
名称	SmilChr06G003132
描述	uncharacterized SmilChr06G003132
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	44195832 - 44202052 / `-`

ID 对照

NCBI Gene ID	`LOC130989857`
GeneID	`130989857`
locus_tag	`-`
NCBI Name	`LOC130989857`
原始查询	`LOC130989857`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein [Source:NCBI gene (formerly Entrezgene);Acc:824982]; symbol=AT3G58130; hit=AT3G58130; species=arabidopsis; confidence=high
产物	N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein [Source:NCBI gene (formerly Entrezgene);Acc:824982]; symbol=AT3G58130; hit=AT3G58130; species=arabidopsis; confidence=high
Arabidopsis	`AT3G58130` (AT3G58130) N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein [Source:NCBI gene (formerly Entrezgene);Acc:824982] identity=61.3; qcov=0.991; evalue=1.08e-96; confidence=high
Rice	`Os04g0678800` - identity=59.5; qcov=0.96; evalue=3.64e-87; confidence=high
GO	GO:0000225 (N-acetylglucosaminylphosphatidylinositol deacetylase activity); GO:0005783 (endoplasmic reticulum); GO:0006506 (GPI anchor biosynthetic process)
KEGG	smil00563 (Glycosylphosphatidylinositol (GPI)-anchor biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF02585 (PIG-L)
InterPro	-
eggNOG	-
NR	GeneID:130989857

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057769978.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057769978.1`
3	Nucleus	细胞核	0.00000	`XP_057769978.1`
4	Chromosome	染色体	0.00000	`XP_057769978.1`
5	Centromere	着丝粒	0.00000	`XP_057769978.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:44198348`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C83
`Chr6:44198365`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B105,B11,C57
`Chr6:44198382`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr6:44198563`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A15,C29
`Chr6:44198589`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A3
`Chr6:44198934`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B42,B43,B76,C53,D5
`Chr6:44198937`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B135,B2
`Chr6:44198979`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B86,B95

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057769978.1

258 aa

129

258

PIG-L

PF02585 PIG-L 46-168 aa

XP_057769979.1

258 aa

129

258

PIG-L

PF02585 PIG-L 46-168 aa

XP_057769981.1

258 aa

129

258

PIG-L

PF02585 PIG-L 46-168 aa

XP_057769982.1

258 aa

129

258

PIG-L

PF02585 PIG-L 46-168 aa

XP_057769983.1

258 aa

129

258

PIG-L

PF02585 PIG-L 46-168 aa

XP_057769984.1

258 aa

129

258

PIG-L

PF02585 PIG-L 46-168 aa

XP_057769985.1

249 aa

124

249

PIG-L

PF02585 PIG-L 48-159 aa

XP_057769986.1

224 aa

112

224

PIG-L

PF02585 PIG-L 12-134 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057769978.1`	Pfam	`PF02585`	PIG-L	Family	46	168	7e-23	82.2	GlcNAc-PI de-N-acetylase
`XP_057769979.1`	Pfam	`PF02585`	PIG-L	Family	46	168	7e-23	82.2	GlcNAc-PI de-N-acetylase
`XP_057769981.1`	Pfam	`PF02585`	PIG-L	Family	46	168	7e-23	82.2	GlcNAc-PI de-N-acetylase
`XP_057769982.1`	Pfam	`PF02585`	PIG-L	Family	46	168	7e-23	82.2	GlcNAc-PI de-N-acetylase
`XP_057769983.1`	Pfam	`PF02585`	PIG-L	Family	46	168	7e-23	82.2	GlcNAc-PI de-N-acetylase
`XP_057769984.1`	Pfam	`PF02585`	PIG-L	Family	46	168	7e-23	82.2	GlcNAc-PI de-N-acetylase
`XP_057769985.1`	Pfam	`PF02585`	PIG-L	Family	48	159	1.8e-14	55.1	GlcNAc-PI de-N-acetylase
`XP_057769986.1`	Pfam	`PF02585`	PIG-L	Family	12	134	5.1e-23	82.7	GlcNAc-PI de-N-acetylase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA

XM_057914002.1
ATGGGGGCTATATATATAATTACCCTTTAAGAAAATAAATTCCCCCACAGATTCGGCCTAAAGACTTGGCCCATTAATATCATAAATTTCAGTCAAACAATTGCAGCCCAACAGTAGAGGCCCAATCAAAAAATCAATTACTGAAGCCCAACCCATCTCTCTTTCTTTCTTTCTTCTCAATAATCGGCTGATACCTTCTCTCTCTCTCTCTCGTTCTCGCTGTATACAGAACAGCACCTCTCCCTTTCTCTAAGCTCTGG...

XM_057913995.1
ATGGGGGCTATATATATAATTACCCTTTAAGAAAATAAATTCCCCCACAGATTCGGCCTAAAGACTTGGCCCATTAATATCATAAATTTCAGTCAAACAATTGCAGCCCAACAGTAGAGGCCCAATCAAAAAATCAATTACTGAAGCCCAACCCATCTCTCTTTCTTTCTTTCTTCTCAATAATCGGCTGATACCTTCTCTCTCTCTCTCTCGTTCTCGCTGTATACAGAACAGCACCTCTCCCTTTCTCTAAGCTCTGG...

CDS

8 records

下载 CDS FASTA

LOC130989857
ATGATTGCGGCTACATCCTATCTCAGAATCGAACATGATATGGATAGCATTAATCTCACCAGTGCTAGTGCTCTTATTTACTTCTCTTTGCAAAGTTTTTCTGGAATCTTTGTCCGCCTCAAAAGCAGCATTCTTAAACGATGGTTCTTTGCTCCTGTGATTAATTACCTGACTTCTGGGCATCATAATGTACACATACTTTGCATGTCAACTGGCAATGCAGACGGCATGGGAAGTATTAGAAAAGAAGAGTTATACCT...

LOC130989857
ATGATATGGATAGCATTAATCTCACCAGTGCTAGTGCTCTTATTTACTTCTCTTTGCAAAGTTTTTCTGGAATCTTTGTCCGCCTCAAAAGCAGCATTCTTAAACGATGGTGCGAGTTCTAGAAGGAGAAATGTCTTGGTGGTTATTGCTCATCCTGACGATGAGTCTATGTTCTTTGCTCCTGTGATTAATTACCTGACTTCTGGGCATCATAATGTACACATACTTTGCATGTCAACTGGCAATGCAGACGGCATGGG...

Protein

8 records

下载 Protein FASTA

XP_057769978.1
MIWIALISPVLVLLFTSLCKVFLESLSASKAAFLNDGASSRRRNVLVVIAHPDDESMFFAPVINYLTSGHHNVHILCMSTGNADGMGSIRKEELYLASVVLKIPTQQVKILDHPDLQDGFGKVWNWNLLASIIDEETRTHSIDLIITFDDYGISGHCNHCDVHQGVRKLLLDASGRRLEACEIVSPNIVRKYIGPVDIWLSILFCRLKKDGPSYCLVNLDLRKSYAAMAQHSSQWVWFRKLFVTFSSCTYVTTLKKIV

XP_057769979.1
MIWIALISPVLVLLFTSLCKVFLESLSASKAAFLNDGASSRRRNVLVVIAHPDDESMFFAPVINYLTSGHHNVHILCMSTGNADGMGSIRKEELYLASVVLKIPTQQVKILDHPDLQDGFGKVWNWNLLASIIDEETRTHSIDLIITFDDYGISGHCNHCDVHQGVRKLLLDASGRRLEACEIVSPNIVRKYIGPVDIWLSILFCRLKKDGPSYCLVNLDLRKSYAAMAQHSSQWVWFRKLFVTFSSCTYVTTLKKIV

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器